View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9759_low_23 (Length: 260)

Name: NF9759_low_23
Description: NF9759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9759_low_23
NF9759_low_23
[»] chr1 (10 HSPs)
chr1 (112-188)||(1079124-1079200)
chr1 (209-247)||(48025356-48025394)
chr1 (209-246)||(27209000-27209037)
chr1 (209-249)||(5463586-5463626)
chr1 (209-249)||(15823045-15823085)
chr1 (209-249)||(25151826-25151866)
chr1 (209-249)||(29567907-29567947)
chr1 (209-249)||(32807038-32807078)
chr1 (209-249)||(50094240-50094280)
chr1 (209-249)||(50249321-50249361)
[»] scaffold0078 (1 HSPs)
scaffold0078 (209-249)||(1515-1555)
[»] chr7 (5 HSPs)
chr7 (208-246)||(35777829-35777867)
chr7 (209-249)||(48684734-48684774)
chr7 (209-249)||(19105101-19105141)
chr7 (209-249)||(22298007-22298047)
chr7 (209-249)||(45948730-45948770)
[»] chr2 (7 HSPs)
chr2 (208-249)||(13562004-13562045)
chr2 (209-249)||(4133035-4133075)
chr2 (209-249)||(12342104-12342144)
chr2 (209-249)||(29396782-29396822)
chr2 (209-249)||(43427389-43427429)
chr2 (209-249)||(43971515-43971555)
chr2 (209-249)||(45301776-45301816)
[»] chr3 (5 HSPs)
chr3 (209-249)||(44676232-44676272)
chr3 (209-249)||(45213821-45213861)
chr3 (209-246)||(33194133-33194170)
chr3 (208-249)||(50646209-50646250)
chr3 (209-249)||(38016386-38016426)
[»] chr8 (4 HSPs)
chr8 (209-246)||(9812184-9812221)
chr8 (209-249)||(15160548-15160588)
chr8 (209-249)||(39463270-39463310)
chr8 (209-249)||(39698768-39698808)
[»] chr4 (7 HSPs)
chr4 (208-249)||(37624566-37624607)
chr4 (209-249)||(4505348-4505388)
chr4 (209-249)||(19451317-19451357)
chr4 (209-249)||(19878659-19878699)
chr4 (209-249)||(39982114-39982154)
chr4 (209-249)||(51733600-51733640)
chr4 (209-249)||(52957896-52957936)
[»] scaffold0110 (1 HSPs)
scaffold0110 (209-249)||(24842-24882)
[»] chr6 (1 HSPs)
chr6 (209-249)||(12459420-12459460)
[»] chr5 (6 HSPs)
chr5 (209-249)||(7317039-7317079)
chr5 (209-249)||(10345034-10345074)
chr5 (209-249)||(14620596-14620636)
chr5 (209-249)||(27797792-27797832)
chr5 (209-249)||(39566194-39566234)
chr5 (209-249)||(42104165-42104205)


Alignment Details
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 1079200 - 1079124
Alignment:
Q  112 ggtcatcaaccacgttctcctctatttaaatcaacagaaaattggtgactttatctctctaataggacgatgtttta 188  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1079200 ggtcatcaaccacgttctcctctatataaatcaacagaaaattggtgactttatctctctaataggacgatgtttta 1079124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 48025394 - 48025356
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttc 247  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  48025394 aatgtcactttcggtttccaatgcaataataactttttc 48025356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 27209000 - 27209037
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataacttttt 246  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  27209000 aatgtcactttcggtttccaatgcaataataacttttt 27209037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 5463586 - 5463626
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| ||||| |||||||| |||||||||||||    
T  5463586 aatgtcactttcagtttccaatgcaattataactttttctt 5463626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 15823045 - 15823085
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| ||||| |||||||| |||||||||||||    
T  15823045 aatgtcactttcagtttccaatgcaataataactttttctt 15823085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 25151826 - 25151866
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||||||||| |||||||| ||||| |||||||    
T  25151826 aatgtcactttcggtttccaatgcaataataacattttctt 25151866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 29567907 - 29567947
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| ||||| |||||||| |||||||||||||    
T  29567907 aatgtcactttcagtttccaatgcaataataactttttctt 29567947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 32807078 - 32807038
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| ||||| |||||||| |||||||||||||    
T  32807078 aatgtcactttcagtttccaatgcaataataactttttctt 32807038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 50094240 - 50094280
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| ||||| |||||||| |||||||||||||    
T  50094240 aatgtcactttcagtttccaatgcaataataactttttctt 50094280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 50249321 - 50249361
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| ||||| |||||||| |||||||||||||    
T  50249321 aatgtcactttcagtttccaatgcaataataactttttctt 50249361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 1555 - 1515
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  1555 aatgtcactttcagtttctaatgcaatgataactttttctt 1515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 208 - 246
Target Start/End: Original strand, 35777829 - 35777867
Alignment:
Q  208 aaatgtcactttcggtttctaatgcaatgataacttttt 246  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  35777829 aaatgtcactttcggtttctaatgcaataataacttttt 35777867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 48684734 - 48684774
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  48684734 aatgtcactttcggtttccaatgcaataataactttttctt 48684774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 19105141 - 19105101
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| |||| ||||||||| |||||||||||||    
T  19105141 aatgtcactttcagtttttaatgcaataataactttttctt 19105101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 22298007 - 22298047
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| ||||| |||||||| |||||||||||||    
T  22298007 aatgtcactttcagtttccaatgcaataataactttttctt 22298047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 45948770 - 45948730
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| ||||| |||||||| |||||||||||||    
T  45948770 aatgtcactttcagtttccaatgcaataataactttttctt 45948730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 13562004 - 13562045
Alignment:
Q  208 aaatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    ||||||||||||| |||||||||||||| |||||||||||||    
T  13562004 aaatgtcactttcagtttctaatgcaataataactttttctt 13562045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 4133035 - 4133075
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  4133035 aatgtcactttcggtttccaatgcaataataactttttctt 4133075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 12342104 - 12342144
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  12342104 aatgtcactttcggtttccaatgcaataataactttttctt 12342144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 29396822 - 29396782
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  29396822 aatgtcactttcggtttccaatgcaataataactttttctt 29396782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 43427429 - 43427389
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| ||||| |||||||| |||||||||||||    
T  43427429 aatgtcactttcagtttccaatgcaataataactttttctt 43427389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 43971515 - 43971555
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| ||||| |||||||| |||||||||||||    
T  43971515 aatgtcactttcagtttccaatgcaataataactttttctt 43971555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 45301776 - 45301816
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| ||||| |||||||| |||||||||||||    
T  45301776 aatgtcactttcagtttccaatgcaataataactttttctt 45301816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 44676232 - 44676272
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| ||||| ||||||||||||||||||||||    
T  44676232 aatgtcactttcagtttccaatgcaatgataactttttctt 44676272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 45213861 - 45213821
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| |||||||||||||| |||||||||||||    
T  45213861 aatgtcactttcagtttctaatgcaataataactttttctt 45213821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 33194170 - 33194133
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataacttttt 246  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  33194170 aatgtcactttcagtttccaatgcaatgataacttttt 33194133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 50646250 - 50646209
Alignment:
Q  208 aaatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    ||||||||||||| ||||| |||||||| |||||||||||||    
T  50646250 aaatgtcactttcagtttccaatgcaataataactttttctt 50646209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 38016386 - 38016426
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| ||||| |||||||| |||||||||||||    
T  38016386 aatgtcactttcagtttccaatgcaataataactttttctt 38016426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 9812184 - 9812221
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataacttttt 246  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  9812184 aatgtcactttcagtttctaatgcaataataacttttt 9812221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 15160588 - 15160548
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| ||||| |||||||| |||||||||||||    
T  15160588 aatgtcactttcagtttccaatgcaataataactttttctt 15160548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 39463270 - 39463310
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| ||||| |||||||| |||||||||||||    
T  39463270 aatgtcactttcagtttccaatgcaataataactttttctt 39463310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 39698808 - 39698768
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| ||||| |||||||| |||||||||||||    
T  39698808 aatgtcactttcagtttccaatgcaataataactttttctt 39698768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 37624566 - 37624607
Alignment:
Q  208 aaatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    ||||||||||||| ||||| |||||||| |||||||||||||    
T  37624566 aaatgtcactttcagtttccaatgcaataataactttttctt 37624607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 4505348 - 4505388
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| ||||| |||||||| |||||||||||||    
T  4505348 aatgtcactttcagtttccaatgcaataataactttttctt 4505388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 19451357 - 19451317
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| ||||| |||||||| |||||||||||||    
T  19451357 aatgtcactttcagtttccaatgcaataataactttttctt 19451317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 19878659 - 19878699
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| ||||| |||||||| |||||||||||||    
T  19878659 aatgtcactttcagtttccaatgcaataataactttttctt 19878699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 39982114 - 39982154
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| ||||| |||||||| |||||||||||||    
T  39982114 aatgtcactttcagtttccaatgcaataataactttttctt 39982154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 51733640 - 51733600
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| |||||||||||||| |||| ||||||||    
T  51733640 aatgtcactttcagtttctaatgcaataataattttttctt 51733600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 52957936 - 52957896
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| ||||| |||||||| |||||||||||||    
T  52957936 aatgtcactttcagtttccaatgcaataataactttttctt 52957896  T

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Target: scaffold0110 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 24882 - 24842
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| ||||| |||||||| |||||||||||||    
T  24882 aatgtcactttcagtttccaatgcaataataactttttctt 24842  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 12459460 - 12459420
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||||||||||||| |||| ||| |||||||||    
T  12459460 aatgtcactttcggtttctaatacaataatatctttttctt 12459420  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 7317039 - 7317079
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| ||||| |||||||| |||||||||||||    
T  7317039 aatgtcactttcagtttccaatgcaataataactttttctt 7317079  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 10345074 - 10345034
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| ||||| |||||||| |||||||||||||    
T  10345074 aatgtcactttcagtttccaatgcaataataactttttctt 10345034  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 14620636 - 14620596
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| ||||| |||||||| |||||||||||||    
T  14620636 aatgtcactttcagtttccaatgcaataataactttttctt 14620596  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 27797792 - 27797832
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| ||||| |||||||| |||||||||||||    
T  27797792 aatgtcactttcagtttccaatgcaataataactttttctt 27797832  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 39566194 - 39566234
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| ||||| |||||||| |||||||||||||    
T  39566194 aatgtcactttcagtttccaatgcaataataactttttctt 39566234  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 42104205 - 42104165
Alignment:
Q  209 aatgtcactttcggtttctaatgcaatgataactttttctt 249  Q
    |||||||||||| ||||| |||||||| |||||||||||||    
T  42104205 aatgtcactttcagtttccaatgcaataataactttttctt 42104165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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