View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9759_low_24 (Length: 260)
Name: NF9759_low_24
Description: NF9759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9759_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 35796644 - 35796868
Alignment:
| Q |
18 |
cttcaaaatcacgaattttcacatcaagtttagttacaatgaaagcattgttatggttcatgattttggtgttttcagttaactcattgggatctgaatc |
117 |
Q |
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| T |
35796644 |
cttcaaaatcaggaattttcacatcaagtttagttacaatgaaagcattgttatggttcatgattttggtgttttcagttaactcattgggatctgaatc |
35796743 |
T |
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| Q |
118 |
aaagagaacggaagtggcatacgcgagtttgttatacggagatgaattcttgttaggcgttagggttcttggaaaatcgatacgcgatactcgatcaaac |
217 |
Q |
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| T |
35796744 |
aaagagaacggaagtggcatacgcgagtttgttatacggagatgaattcttgttaggcgttagggttcttggaaaatcgatacgcgatactcgatcaaac |
35796843 |
T |
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| Q |
218 |
aaggatatggttgttttagtctctg |
242 |
Q |
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| T |
35796844 |
aaggatatggttgttttagtctctg |
35796868 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 242
Target Start/End: Complemental strand, 47717533 - 47717440
Alignment:
| Q |
149 |
ttatacggagatgaattcttgttaggcgttagggttcttggaaaatcgatacgcgatactcgatcaaacaaggatatggttgttttagtctctg |
242 |
Q |
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| T |
47717533 |
ttatacggagatgaattcttattgggcgttcgagttctcggtaaatccatacgcgacaccagatccaataaagacatggttgttttggtctctg |
47717440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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