View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9759_low_26 (Length: 252)
Name: NF9759_low_26
Description: NF9759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9759_low_26 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 2310877 - 2311118
Alignment:
| Q |
11 |
agcagagaatagagaagtggactctgttgtagatgaaattcttggaggaaaaatattttaagaatttatgagcaatggctctgtttatgttgattattct |
110 |
Q |
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| T |
2310877 |
agcagagaatagagaagtggactctgttgtagatgaaattcttggaggaaaaatattttaagaatttatgagcaatggctctgtttatgttaattattct |
2310976 |
T |
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| Q |
111 |
tccttatagtcatagataggttcatcaatcatgatataacttttctgttgatgcatctatcaactttgtaacattctattaatggccctgactatctaac |
210 |
Q |
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| T |
2310977 |
tccttatagtcatagataggttcatcaatcatgatataacttttctgttgatgcatctatcaactttgtaacattctattaatggctctggctatctaac |
2311076 |
T |
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| Q |
211 |
aatgatctgatatagcttttttctgtcctgcatctgctatga |
252 |
Q |
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| T |
2311077 |
aatgatctgatatagcttttttctgtcctgcatctgctatga |
2311118 |
T |
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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 248
Target Start/End: Complemental strand, 2928337 - 2928160
Alignment:
| Q |
61 |
aaatattttaagaatttatgagcaatggctctgtttatgttgattattcttccttatagtcatagataggttcatcaatca--tgatataacttttctgt |
158 |
Q |
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| T |
2928337 |
aaatattttaagaatttatgagcaatgactctgtttatgctacttattcttcctt------atagataggttcat-gatcagtggccttaagttttctat |
2928245 |
T |
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| Q |
159 |
tgatgcatc--tatcaactttgtaacattctattaatggccctgactatctaacaatgatctgatatagcttttttctgtcctgcatctgct |
248 |
Q |
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| T |
2928244 |
tgatgcatctatatcacctttgtaacattctatta-------cgactatctaacagtgatctggtatggcttttttctgtgctgcatctgct |
2928160 |
T |
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