View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9759_low_28 (Length: 250)
Name: NF9759_low_28
Description: NF9759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9759_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 10765215 - 10764973
Alignment:
| Q |
1 |
cttaatatataagccatgtcttttatataagggactctggtaatccgaagttcaaccatgagttaagtatagtttgacgaagatttgttccatccaaaaa |
100 |
Q |
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| T |
10765215 |
cttaatatataagtcatgtcttttatataagggactctggtaatccgaagttcaaccatgagttaagtatagtctgaccaagatttgtttcatccaaaaa |
10765116 |
T |
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| Q |
101 |
tcgaacttaaattctcacgagcgaacaattcgtctattgataaagctcattaatcacttgaattcaatcattaatcacttgagtcaaataac-ttaactc |
199 |
Q |
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| T |
10765115 |
tcgaacttaagttctcacgagcgaacgattcgtctactgataaagctcattaatcacttgaattcaatcattaatcacttgagtcaaataactttaactc |
10765016 |
T |
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| Q |
200 |
aacatttcaactaaaactaaacctaataactgctcttcttctc |
242 |
Q |
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| T |
10765015 |
aacatttcaactaaaactaaacctaataactgctcttcttctc |
10764973 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 16941327 - 16941365
Alignment:
| Q |
64 |
taagtatagtttgacgaagatttgttccatccaaaaatc |
102 |
Q |
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| T |
16941327 |
taagtatagtttgaccaagatttgttccatcccaaaatc |
16941365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 11602493 - 11602453
Alignment:
| Q |
35 |
ctctggtaatccgaagttcaaccatgagttaagtatagttt |
75 |
Q |
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| T |
11602493 |
ctctggtaatccgaagttcggccatgaggtaagtatagttt |
11602453 |
T |
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