View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9759_low_29 (Length: 250)
Name: NF9759_low_29
Description: NF9759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9759_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 32389784 - 32389882
Alignment:
| Q |
138 |
agatacatttgataactattttaattttatgaaaggtttttgcaactctataagggctaaaaactactagattattgttaggagagcaaggactttatg |
236 |
Q |
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| T |
32389784 |
agatacatttgataactattttgattttatgaaaggtttttacaactctataagtgctaaaaactactaaattatttttaggaggacaaggaatttatg |
32389882 |
T |
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Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 105 - 178
Target Start/End: Original strand, 32384335 - 32384408
Alignment:
| Q |
105 |
ttaaagggacaaacacaaaataacatagacttaagatacatttgataactattttaattttatgaaaggttttt |
178 |
Q |
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| T |
32384335 |
ttaaagggacaaacacaaaacaacatatacttaagatacatttgataactattttaattttatgaaaggttttt |
32384408 |
T |
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