View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9759_low_3 (Length: 515)

Name: NF9759_low_3
Description: NF9759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9759_low_3
NF9759_low_3
[»] chr7 (6 HSPs)
chr7 (19-498)||(20331268-20331755)
chr7 (411-480)||(1841937-1842006)
chr7 (411-464)||(38425471-38425524)
chr7 (412-465)||(38399635-38399688)
chr7 (412-465)||(38402177-38402230)
chr7 (412-465)||(38404138-38404191)
[»] chr6 (1 HSPs)
chr6 (253-311)||(16174140-16174199)
[»] chr1 (2 HSPs)
chr1 (293-342)||(17775291-17775340)
chr1 (293-341)||(10014706-10014754)
[»] chr5 (1 HSPs)
chr5 (293-331)||(25663604-25663642)
[»] chr4 (1 HSPs)
chr4 (411-464)||(5748624-5748677)
[»] chr3 (1 HSPs)
chr3 (411-464)||(18678662-18678715)


Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 498
Target Start/End: Complemental strand, 20331755 - 20331268
Alignment:
Q  19 tcataacacattttgatgttcataatcatgtttcttttaaaactttggtatcgtgcatttgtaatat-atgttctaaaagaaaactaagaaagnnnnnnn 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||           
T  20331755 tcataacacattttgatgttcataatcatgtttcttttaaaaccttggtatcgtgcatttgtaatattatgttctaaaagaaaactaagaaagttttttt 20331656  T
Q  118 nnnn-ctctttttgaagaagccaaactagtccactgaattccacgtcgaggagaattgtactctaagactttgatagaagcatgctccaagatcccaagc 216  Q
         |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20331655 tttttctctttttgaagaagccaaactagcccactgaattccacgtcgaggagaattgtactcttagactttgatagaagcatgctccaagatcccaagc 20331556  T
Q  217 caacaccctcatacaaac-------ataaaacataacacatatcatatcataatcatttcgatctttatgttcaaataatttcttatcattaaaacatca 309  Q
    |||||||||| |  ||||       ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  20331555 caacaccctcgtgtaaacctaagtgataaaacataacacatatcatatcataatcatttcgatctttacgttcaaataatt-cttatcattaaaacatca 20331457  T
Q  310 acatcaaaaggattttgtgattttcctcaacaccatggtatnnnnnnnnnnnnttaccctttattataacgaaaggttaataatacaatgacttaatgta 409  Q
    |||||| ||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||    
T  20331456 acatcagaaggattttgtgattttcctcaacaccatggtataaaaaataaaaattaccctttattataacgaaaggttaataatacaatgacttaatgta 20331357  T
Q  410 gtgaaaagttaattaaataatattcaactcttataattatcaagtttattatatgaacacctttctaaatgcgcctaaggcacaaacat 498  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  20331356 gtgaaaagttaattaaataatattcaactctaataattatcaagtttattatatggccacctttctaaatgcgcctaaggcacaaacat 20331268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 411 - 480
Target Start/End: Complemental strand, 1842006 - 1841937
Alignment:
Q  411 tgaaaagttaattaaataatattcaactcttataattatcaagtttattatatgaacacctttctaaatg 480  Q
    |||||||||| ||||||||||||||| |||||| |||||||| |||||||| |||||  |||||| ||||    
T  1842006 tgaaaagttagttaaataatattcaattcttattattatcaaatttattatttgaacttctttcttaatg 1841937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 411 - 464
Target Start/End: Original strand, 38425471 - 38425524
Alignment:
Q  411 tgaaaagttaattaaataatattcaactcttataattatcaagtttattatatg 464  Q
    |||||| ||| ||||| |||||||||||||||| ||||||||||||||||||||    
T  38425471 tgaaaatttagttaaacaatattcaactcttatgattatcaagtttattatatg 38425524  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 412 - 465
Target Start/End: Original strand, 38399635 - 38399688
Alignment:
Q  412 gaaaagttaattaaataatattcaactcttataattatcaagtttattatatga 465  Q
    ||||| ||| ||||| |||||||||| ||||| |||||||||||||||||||||    
T  38399635 gaaaatttagttaaacaatattcaacacttatgattatcaagtttattatatga 38399688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 412 - 465
Target Start/End: Original strand, 38402177 - 38402230
Alignment:
Q  412 gaaaagttaattaaataatattcaactcttataattatcaagtttattatatga 465  Q
    ||||| ||| ||||| |||||||||| ||||| |||||||||||||||||||||    
T  38402177 gaaaatttagttaaacaatattcaacacttatgattatcaagtttattatatga 38402230  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 412 - 465
Target Start/End: Original strand, 38404138 - 38404191
Alignment:
Q  412 gaaaagttaattaaataatattcaactcttataattatcaagtttattatatga 465  Q
    ||||| ||| ||||| |||||||||||||||| |||||||| ||||||||||||    
T  38404138 gaaaatttagttaaacaatattcaactcttatgattatcaaatttattatatga 38404191  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 16174140 - 16174199
Alignment:
Q  253 catatcataatcatttcgatctttatgttcaaataa-tttcttatcattaaaacatcaac 311  Q
    |||||||||||||||| ||||||||||||||| ||| ||| |||||||||||||||||||    
T  16174140 catatcataatcattttgatctttatgttcaattaagttttttatcattaaaacatcaac 16174199  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 293 - 342
Target Start/End: Complemental strand, 17775340 - 17775291
Alignment:
Q  293 ttatcattaaaacatcaacatcaaaaggattttgtgattttcctcaacac 342  Q
    |||||| |||||||||||| | | ||||||||||||||||||||||||||    
T  17775340 ttatcagtaaaacatcaacttaagaaggattttgtgattttcctcaacac 17775291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 10014706 - 10014754
Alignment:
Q  293 ttatcattaaaacatcaacatcaaaaggattttgtgattttcctcaaca 341  Q
    |||||||||||| | |||| | | |||||||||||||||||||||||||    
T  10014706 ttatcattaaaataccaacttaagaaggattttgtgattttcctcaaca 10014754  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 293 - 331
Target Start/End: Original strand, 25663604 - 25663642
Alignment:
Q  293 ttatcattaaaacatcaacatcaaaaggattttgtgatt 331  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  25663604 ttatcattaaaacatcaacttaaaaaggattttgtgatt 25663642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 464
Target Start/End: Original strand, 5748624 - 5748677
Alignment:
Q  411 tgaaaagttaattaaataatattcaactcttataattatcaagtttattatatg 464  Q
    |||||||||| |||||| |||||||| | |||||||||  ||||||||||||||    
T  5748624 tgaaaagttagttaaattatattcaattattataattactaagtttattatatg 5748677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 464
Target Start/End: Original strand, 18678662 - 18678715
Alignment:
Q  411 tgaaaagttaattaaataatattcaactcttataattatcaagtttattatatg 464  Q
    |||||||||| |||||| |||||||| | |||||||||  ||||||||||||||    
T  18678662 tgaaaagttagttaaattatattcaattattataattactaagtttattatatg 18678715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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