View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9759_low_30 (Length: 242)
Name: NF9759_low_30
Description: NF9759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9759_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 52076940 - 52077152
Alignment:
| Q |
17 |
aacaataccattaattattctccatcagaatccattgttcgtcatccctaccaacaacaacaacctacaattcagattcaacccatcaaaacattaacaa |
116 |
Q |
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| T |
52076940 |
aacaacaccattaattattctccatcagaatccattgttcctcatccctaccaacaacaacaacctaaaatccagattcaacccatcaaaacattaacaa |
52077039 |
T |
|
| Q |
117 |
caatagggaagagatttgcatctcaactaacatgtattattgttgctattcaaattattgttgttatacctcgtgatacacaagaacaatggatgcatca |
216 |
Q |
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| T |
52077040 |
caatagggaagagatttgcatctccactaacatgtattattgttgctattcaaattgttgctgttctacctcgtgatacacaagaacaatggatgcatca |
52077139 |
T |
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| Q |
217 |
ctctcttttgcct |
229 |
Q |
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||||||||||||| |
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| T |
52077140 |
ctctcttttgcct |
52077152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 3615670 - 3615864
Alignment:
| Q |
17 |
aacaataccattaattattctccatcagaatccattgttcgtcatccctaccaacaacaacaacctacaattcagattcaacccatcaa---------aa |
107 |
Q |
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| T |
3615670 |
aacaacaccattaattattctccatcagaacccattgtttctcatccctaccaacaacaacaacctaaaattcagattcaacccatcaaaacattaacaa |
3615769 |
T |
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| Q |
108 |
cattaacaacaatagggaagagatttgcatctcaactaacatgtattattgttgctattcaaattattgttgttatacctcgtgatacacaagaacaat |
206 |
Q |
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| T |
3615770 |
cattaacaacaatagggaagagatttgcatctc----cacatgtattattgttgctattcaaattgttgctgttatacatcgtgatacacaagaacaat |
3615864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 16757195 - 16756990
Alignment:
| Q |
17 |
aacaataccattaattattctccatcagaatccattgttcgtcatccctaccaacaacaacaacctacaattcagattcaacccatcaaaacattaacaa |
116 |
Q |
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||||| ||||||||||||||||||||| || ||||||||| ||||||||||||||||| || ||| ||| |||||||||||||||||||||||||||| |
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| T |
16757195 |
aacaacaccattaattattctccatcaaaacccattgttcctcatccctaccaacaaccac---ctaaaatccagattcaacccatcaaaacattaacaa |
16757099 |
T |
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| Q |
117 |
caatagggaagagatttgcatctcaactaacatgtattattgttgctattcaaattattgttgttatacctcgtgatacacaagaacaatggatgcatca |
216 |
Q |
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||||| ||||||||||| |||||| ||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
16757098 |
caataaggaagagatttacatctccactaacatgtattattgttgctattcaaagttttgctgttatacctcgtgatacacaagaacaatggatgcatca |
16756999 |
T |
|
| Q |
217 |
ctctctttt |
225 |
Q |
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||||||||| |
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| T |
16756998 |
ctctctttt |
16756990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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