View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9759_low_32 (Length: 237)
Name: NF9759_low_32
Description: NF9759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9759_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 42470748 - 42470548
Alignment:
| Q |
19 |
tgattatgtttggttgattcatcttgttgattttgatagctcccatgttttctcatttaggatcagttctgagatgactgcatgtgatcttacacaaagg |
118 |
Q |
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| T |
42470748 |
tgattatgtttggttgattcatcttgttgattttgatagctcccatgttttctcatttaggatcagttctgagatgactgcatgtgatcttacacaaagg |
42470649 |
T |
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| Q |
119 |
tagtctaatgaatgttaaatttcatgaatcactgcatattaggtaaatcgtaaaaccatgattaattatgtagagcagtagacatgttttgaatattgca |
218 |
Q |
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| T |
42470648 |
tagtctaatgaatgttaaatttcatgaatcactgcatattaggtaaatcgtaaaaccaagattaattatgtagagcagtagacgtgttttgaatattgca |
42470549 |
T |
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| Q |
219 |
g |
219 |
Q |
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| T |
42470548 |
g |
42470548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 42478040 - 42477855
Alignment:
| Q |
20 |
gattatgtttggttgattcatcttgttgattttgatagctcccatgttttctcatttaggatcagt--tctgagatgactgcatgtgatcttacacaaag |
117 |
Q |
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| T |
42478040 |
gattatatttggttgtttcatcttgttgattatgatagctcgcatattttctcatttaggatcagtagtctgagatgactccatataatcttacacatac |
42477941 |
T |
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| Q |
118 |
gtagtctaatgaatgttaaatttcatgaatcactgcatattaggtaaatcgtaaaaccatgattaattatgtagagcagtagacatgttttgaatattgc |
217 |
Q |
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| T |
42477940 |
aaagt----tgaatg------------aatcactgcatattaggtaaattgtaaaaccatgattaattatgtagagcagaagatgtgtttagaatattgc |
42477857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 36 - 192
Target Start/End: Complemental strand, 42465756 - 42465594
Alignment:
| Q |
36 |
ttcatcttgttgattttgatagctccc--atgttttctcatttaggatc-agt--tctgagatgactgcatgtgatcttacacaaaggtagtctaatgaa |
130 |
Q |
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| T |
42465756 |
ttcatcttgttgattatgatagcccccccatgttttctcatttaggaactagtagtctgagatgactctacatgatcttacacataggtagtttaatgaa |
42465657 |
T |
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| Q |
131 |
tgttaaattt-catgaatcactgcatattaggtaaatcgtaaaaccatgattaattatgtaga |
192 |
Q |
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| T |
42465656 |
tcttaatttttcattaaacactgcatattaggtaaatcaaaataccatgattaattatgtaga |
42465594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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