View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9759_low_35 (Length: 230)
Name: NF9759_low_35
Description: NF9759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9759_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 66 - 211
Target Start/End: Original strand, 14437129 - 14437274
Alignment:
| Q |
66 |
attgcaaccacaaatctaacatggaaactttaaagcggagaaatagactactctcaaacacataccatccccataacatccacaccctccaaagtaatta |
165 |
Q |
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| T |
14437129 |
attgcaaccacaaatctaacatggaaactttaaagcggagaaatagactactctcaaacacataccatccccataacatccacaccctacaaagtaaata |
14437228 |
T |
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| Q |
166 |
cataactacatctcacaacactttaagacaagagtataagagaaat |
211 |
Q |
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| T |
14437229 |
cctaactacatctcacaacactttaagacaagagtataagagaaat |
14437274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 82
Target Start/End: Complemental strand, 14437132 - 14437100
Alignment:
| Q |
50 |
caatcacaatataaatattgcaaccacaaatct |
82 |
Q |
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| T |
14437132 |
caatcacaatataaatattgcaaccacaaatct |
14437100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 25078354 - 25078295
Alignment:
| Q |
149 |
accctccaaagtaattacataactacatctcacaacactttaagacaagagtataagaga |
208 |
Q |
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| T |
25078354 |
accctccaaagcaaatacctaattacatctcacaacactctaagacaagagtataagaga |
25078295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 18780004 - 18780042
Alignment:
| Q |
168 |
taactacatctcacaacactttaagacaagagtataaga |
206 |
Q |
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| T |
18780004 |
taactacatctcacaacactctaagacaagaatataaga |
18780042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 15549514 - 15549579
Alignment:
| Q |
145 |
ccacaccctccaaagtaattacataactacatctcacaacactttaagacaagagtataagagaaa |
210 |
Q |
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| T |
15549514 |
ccacaccctccaaagcaaatgcttaattacatctcaaaacactttaacacaagagtacaagagaaa |
15549579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 3289771 - 3289717
Alignment:
| Q |
145 |
ccacaccctccaaagtaattacataactacatctcacaacactttaagacaagag |
199 |
Q |
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| T |
3289771 |
ccacaccgtccaaagaaaatacctaactacatctcacaacactctaagaaaagag |
3289717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 4466900 - 4466855
Alignment:
| Q |
165 |
acataactacatctcacaacactttaagacaagagtataagagaaa |
210 |
Q |
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| T |
4466900 |
acataactacatctcacaacattctaagacaagagtaaaagagaaa |
4466855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 26683507 - 26683465
Alignment:
| Q |
168 |
taactacatctcacaacactttaagacaagagtataagagaaa |
210 |
Q |
| |
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|||||||||||||||||||||||| ||||| |||| ||||||| |
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| T |
26683507 |
taactacatctcacaacactttaacacaagtgtattagagaaa |
26683465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 1605257 - 1605306
Alignment:
| Q |
154 |
ccaaagtaattacataactacatctcacaacactttaagacaagagtata |
203 |
Q |
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| T |
1605257 |
ccaaagaaaatacctaactacatctcataacactctaagacaagagtata |
1605306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 3650978 - 3650934
Alignment:
| Q |
166 |
cataactacatctcacaacactttaagacaagagtataagagaaa |
210 |
Q |
| |
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|||||||| ||||||||||| | ||||||||||||| |||||||| |
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| T |
3650978 |
cataactatatctcacaacattctaagacaagagtacaagagaaa |
3650934 |
T |
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