View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9759_low_38 (Length: 218)
Name: NF9759_low_38
Description: NF9759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9759_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 12613347 - 12613532
Alignment:
| Q |
15 |
taggaccagtttcattatgggcaaaccaagatgtttctgataaggcagaaagaggtgacacaaatgtagaaggagatagtagtttgtttaaatggcttaa |
114 |
Q |
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| T |
12613347 |
taggaccagtttcattatgggcaaaccaagatgtttctgataaggcagaaagaggtgacacaaatgtagaaggagatagtagtttgtttaaatggcttaa |
12613446 |
T |
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| Q |
115 |
ttccaagaaagaaaattctgttctctatgtaagttttggtagcttgaacaagttcccatcatctcaactcattgaaatagctcatg |
200 |
Q |
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| T |
12613447 |
ttccaagaaagagaattctgttctctatgtaagttttggtagcatgaacaagttcccatcatctcaactcattgaaatagctcatg |
12613532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 17572886 - 17572698
Alignment:
| Q |
15 |
taggaccagtttcattatgggcaaaccaagatgtttctgataaggcagaaagaggtgacacaaatgtagaaggagatagtagt---ttgtttaaatggct |
111 |
Q |
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| T |
17572886 |
taggaccagtttcattatgggcaaatcaagatgtttctgataaggaagaaagaggagacaagagagtagaagaaggaaatagtgacttgcttaaatggct |
17572787 |
T |
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| Q |
112 |
taattccaagaaagaaaattctgttctctatgtaagttttggtagcttgaacaagttcccatcatctcaactcattgaaatagctcatg |
200 |
Q |
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| T |
17572786 |
aaactccaagaaagagaattctgttctctatgtaagttttggcagcttaaacaagttcccaacatctcaactcattgaaatagctcatg |
17572698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 17619823 - 17620014
Alignment:
| Q |
12 |
gcataggaccagtttcattatgggcaaaccaagatgtttctgataaggcagaaagaggtgacacaaatgtagaaggagatagtagt---ttgtttaaatg |
108 |
Q |
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| T |
17619823 |
gcataggaccagtttcattatgggcaaatcaagatgtttctgataaggaagaaagaggagaggcaaaagtagaagaaggaaatagtgacttgcttaaatg |
17619922 |
T |
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| Q |
109 |
gcttaattccaagaaagaaaattctgttctctatgtaagttttggtagcttgaacaagttcccatcatctcaactcattgaaatagctcatg |
200 |
Q |
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| T |
17619923 |
gctgcactccaagaaagagaattctgttatctatgtaagttttggcagcttaaacaagttcccaccatctcaactcattgaaatagctcatg |
17620014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 178
Target Start/End: Complemental strand, 17581883 - 17581794
Alignment:
| Q |
89 |
gatagtagtttgtttaaatggcttaattccaagaaagaaaattctgttctctatgtaagttttggtagcttgaacaagttcccatcatct |
178 |
Q |
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| T |
17581883 |
gatagtggcttgcttaaatggcttaaatccaagaaatagaattttgttctctatgtaagttttggcagcttaaacaagtttccaacatct |
17581794 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 12 - 200
Target Start/End: Complemental strand, 14710486 - 14710295
Alignment:
| Q |
12 |
gcataggaccagtttcattatgggcaaaccaagatgtttctgataaggcagaaagaggtgacacaaatgtagaaggagatagtagt---ttgtttaaatg |
108 |
Q |
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| T |
14710486 |
gcataggaccagtttcattatgggcaaatcaagatgtttccgacaacgacgaaagtggaggcacaaaagtagaagaaggaaataatgacttgcttaaatg |
14710387 |
T |
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| Q |
109 |
gcttaattccaagaaagaaaattctgttctctatgtaagttttggtagcttgaacaagttcccatcatctcaactcattgaaatagctcatg |
200 |
Q |
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| T |
14710386 |
gcttaactctaagaaagagaattctgttctctatctaagttttggcagcttaaacaagttcccaacatctcaactcattgaaatagctcatg |
14710295 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 102 - 168
Target Start/End: Original strand, 14756402 - 14756468
Alignment:
| Q |
102 |
ttaaatggcttaattccaagaaagaaaattctgttctctatgtaagttttggtagcttgaacaagtt |
168 |
Q |
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| T |
14756402 |
ttaaatggcttaaatccaagaaatagaattctgttctctatgtaagttttggcagctagaacaagtt |
14756468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 200
Target Start/End: Original strand, 14869721 - 14869819
Alignment:
| Q |
102 |
ttaaatggcttaattccaagaaagaaaattctgttctctatgtaagttttggtagcttgaacaagttcccatcatctcaactcattgaaatagctcatg |
200 |
Q |
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| T |
14869721 |
ttaagtggcttgattctaagaaagatgattctgttctctatgttagttttgggagcatgaacaagttccctactcctcagcttgttgaaatagctcatg |
14869819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 200
Target Start/End: Complemental strand, 16908944 - 16908846
Alignment:
| Q |
102 |
ttaaatggcttaattccaagaaagaaaattctgttctctatgtaagttttggtagcttgaacaagttcccatcatctcaactcattgaaatagctcatg |
200 |
Q |
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|||| |||||| |||| |||||| | |||||||||| ||||| |||||||| ||| ||||||||||||| | ||||||| ||||||||||||||| |
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| T |
16908944 |
ttaagtggcttgattcaaagaaatatgattctgttctttatgttagttttgggagcatgaacaagttccctactcctcaacttgttgaaatagctcatg |
16908846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 53896332 - 53896293
Alignment:
| Q |
29 |
ttatgggcaaaccaagatgtttctgataaggcagaaagag |
68 |
Q |
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| T |
53896332 |
ttatgggcaaactaagatgtttctgataaggcagagagag |
53896293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 53896198 - 53896160
Alignment:
| Q |
161 |
aacaagttcccatcatctcaactcattgaaatagctcat |
199 |
Q |
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| T |
53896198 |
aacaagttcccaatatctcaactcattgaaatagctcat |
53896160 |
T |
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