View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9759_low_4 (Length: 492)

Name: NF9759_low_4
Description: NF9759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9759_low_4
NF9759_low_4
[»] chr1 (1 HSPs)
chr1 (29-393)||(13154778-13155141)
[»] chr5 (4 HSPs)
chr5 (48-393)||(3760983-3761309)
chr5 (48-352)||(2756311-2756614)
chr5 (47-371)||(42628989-42629312)
chr5 (56-192)||(3678404-3678540)
[»] chr4 (4 HSPs)
chr4 (48-368)||(18847844-18848164)
chr4 (48-371)||(42110999-42111322)
chr4 (48-110)||(55328940-55329002)
chr4 (282-355)||(55329174-55329247)
[»] chr7 (6 HSPs)
chr7 (80-367)||(48888002-48888289)
chr7 (263-371)||(19883458-19883566)
chr7 (56-116)||(19883594-19883654)
chr7 (50-110)||(6231999-6232059)
chr7 (317-371)||(29254019-29254073)
chr7 (288-367)||(6232237-6232317)
[»] chr8 (5 HSPs)
chr8 (48-371)||(44684261-44684584)
chr8 (50-369)||(42202481-42202800)
chr8 (213-317)||(3578043-3578147)
chr8 (50-149)||(25968039-25968138)
chr8 (261-353)||(25967835-25967927)
[»] scaffold0691 (1 HSPs)
scaffold0691 (48-371)||(968-1291)
[»] chr2 (4 HSPs)
chr2 (98-371)||(16080291-16080564)
chr2 (60-366)||(9017400-9017709)
chr2 (48-110)||(38970838-38970900)
chr2 (283-331)||(38971073-38971121)
[»] chr3 (1 HSPs)
chr3 (48-368)||(51361058-51361382)
[»] chr6 (2 HSPs)
chr6 (50-196)||(380831-380977)
chr6 (288-367)||(380659-380739)


Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 29 - 393
Target Start/End: Original strand, 13154778 - 13155141
Alignment:
Q  29 ggtaaagacctattaacctttaattttattacacctcaatctttgtttcaacattttgaatgttggagcggggagattgggaagaaaaggctttgcaaag 128  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13154778 ggtaaagacctattaacccttaattttattactcctcaatctttgtttcaacattttgaatgttggagcggggagattgggaagaaaaggctttgcaaag 13154877  T
Q  129 gctattggatggtttggcatgttgtcctatggacgatttggaaagtgccaaacgataggatttttaacgatcttgtgaaagattcgggagaaattgttga 228  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  13154878 gctattggatggtttggcatgctgtcctatggacgatttggaaagcgccaaacgataggatttttaacaatcttgtgaaagaatcgggagaaattgttga 13154977  T
Q  229 tgagattaaggtactctcttggagtttgacgctatctagattaaagagtcatgcttgcttctattacgagtggtgtttgaaccccaaagaatgtttactg 328  Q
    ||| ||||||||||||||||||| || ||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||| |||||||||||||||    
T  13154978 tgacattaaggtactctcttggaattagacgctatctagattaaagagtcctacttgcctctattacgagtggtgtttgaaccctaaagaatgtttactg 13155077  T
Q  329 agaaagctggggtaattttagaggtgtttgggacttttggtgtggcttttggggcggttcagcag 393  Q
    |||||||| |||| | |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13155078 agaaagctcgggt-agtttagaggtgtttgggacttttggtgtggcttgtggggcggttcagcag 13155141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 48 - 393
Target Start/End: Complemental strand, 3761309 - 3760983
Alignment:
Q  48 ttaattttattacacctcaatctttgtttcaacattttgaatgttggagcggggagattgggaagaaaaggctttgcaaaggctattggatggtttggca 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3761309 ttaattttattacacctcaatctttgtttcaacattttgaatgttggagtggggagattgggaagaaaaggctttgcaaaggctattggatggtttggca 3761210  T
Q  148 tgttgtcctatggacgatttggaaagtgccaaacgataggatttttaacgatcttgtgaaagattcgggagaaattgttgatgagattaaggtactctct 247  Q
    || |||||||||||||||                   ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||    
T  3761209 tgctgtcctatggacgat-------------------aggatttttaacgatcttgtgaaagatccgggagaaactgttgatgagattaaggtgctctct 3761129  T
Q  248 tggagtttgacgctatctagattaaagagtcatgcttgcttctattacgagtggtgtttgaaccccaaagaatgtttactgagaaagctggggtaatttt 347  Q
    |||| || |  || ||| ||||||||||||  | | ||| ||||||||||||| |||||||||||||| ||||||||||||| | |||||||||| ||||    
T  3761128 tggaattgggtgcgatcaagattaaagagttctccctgcctctattacgagtgctgtttgaaccccaaggaatgtttactgatatagctggggtagtttt 3761029  T
Q  348 agaggtgtttgggacttttggtgtggcttttggggcggttcagcag 393  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  3761028 agaggtgtttgggacttttggtgtggcttgtggggcggttcagcag 3760983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 48 - 352
Target Start/End: Complemental strand, 2756614 - 2756311
Alignment:
Q  48 ttaattttattacacctcaatctttgtttcaacattttgaatgttggagcggggagattgggaagaaaaggctttgcaaaggctattggatggtttggca 147  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||  ||||| |||||  ||||||||||||||||    
T  2756614 ttaattttattacacctcaatctc-gtttcaacattttgaatgttggagtggggagattgggaagaaaaaactttgtaaaggaaattggatggtttggca 2756516  T
Q  148 tgttgtcctatggacgatttggaaagtgccaaacgataggatttttaacgatcttgtgaaagattcgggagaaattgttgatgagattaaggtactctct 247  Q
    |    || |||||||||||||||||| |  ||| ||||||||||||||  |||||||||||||||  || ||||||||||||||||||||||| || ||     
T  2756515 ttcaatcttatggacgatttggaaagcgagaaatgataggatttttaataatcttgtgaaagattatggtgaaattgttgatgagattaaggtgctttcg 2756416  T
Q  248 tggagtttgacgctatctagattaaagagtcatgcttgcttctattacgagtggtgtttgaaccccaaagaatgtttactgagaaagctggggtaatttt 347  Q
    |||| || || | | |||||| ||||||| | | | ||| | |||||||||||||||| |||||||||  |||||||||||||| || ||||||| ||||    
T  2756415 tggaattggatggtttctagactaaagaggcctccgtgcctttattacgagtggtgttggaaccccaagaaatgtttactgagatagttggggtagtttt 2756316  T
Q  348 agagg 352  Q
    |||||    
T  2756315 agagg 2756311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 47 - 371
Target Start/End: Complemental strand, 42629312 - 42628989
Alignment:
Q  47 tttaattttattacacctcaatctttgtttcaacattttgaatgttggagcggggagattgggaagaaaaggctttgcaaaggctattggatggtttggc 146  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||  |||||||||| |||||| ||||| ||||||||| ||||||    
T  42629312 tttaattttattacacctcgatctctgtttcaacattttgaatgttggagtggggagaccgggaagaaaaagctttgtaaaggatattggatgatttggc 42629213  T
Q  147 atgttgtcctatggacgatttggaaagtgccaaacgataggatttttaacgatcttgtgaaagattcgggagaaattgttgatgagattaaggtactctc 246  Q
    |||  ||  ||||||| ||||||||||||  ||| |||||||||||||   ||||||||||||| |  || |||||||||||||| |||| ||| || ||    
T  42629212 atgcggtattatggac-atttggaaagtgagaaatgataggatttttagtaatcttgtgaaagaatttggtgaaattgttgatgaaattatggtgctttc 42629114  T
Q  247 ttggagtttgacgctatctagattaaagagtcatgcttgcttctattacgagtggtgtttgaaccccaaagaatgtttactgagaaagctggggtaattt 346  Q
     |||| || | || |  ||||| | || |||| | | ||| ||||||| |||||||||  ||||||||| |||||| | |||||| || ||||||| |||    
T  42629113 gtggaattgggcggttactagactgaaaagtcctccctgcctctattatgagtggtgtcggaaccccaaggaatgtcttctgagatagttggggtagttt 42629014  T
Q  347 tagaggtgtttgggacttttggtgt 371  Q
    |||||| ||  |||||||| |||||    
T  42629013 tagaggcgtccgggactttcggtgt 42628989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 192
Target Start/End: Complemental strand, 3678540 - 3678404
Alignment:
Q  56 attacacctcaatctttgtttcaacattttgaatgttggagcggggagattgggaagaaaaggctttgcaaaggctattggatggtttggcatgttgtcc 155  Q
    ||||||||||||||| |||||||||||||||| |||||||  |||||||| |||| ||  |  ||| | |||||  ||||| || |||||||||  ||      
T  3678540 attacacctcaatctatgtttcaacattttgagtgttggaatggggagatcgggaggagtaaacttcggaaaggtcattggttgatttggcatgcggtgg 3678441  T
Q  156 tatggacgatttggaaagtgccaaacgataggatttt 192  Q
    |||||||||||||||| | ||  || |||||||||||    
T  3678440 tatggacgatttggaaggcgcggaatgataggatttt 3678404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 48 - 368
Target Start/End: Original strand, 18847844 - 18848164
Alignment:
Q  48 ttaattttattacacctcaatctttgtttcaacattttgaatgttggagcggggagattgggaagaaaaggctttgcaaaggctattggatggtttggca 147  Q
    ||||||||||||||||| || || ||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||| |||||| || |||||||    
T  18847844 ttaattttattacaccttaaactatgtttcaacattttgaatgttggagtggggagattgggaagaaaaagctttgtaaagggtattggttgatttggca 18847943  T
Q  148 tgttgtcctatggacgatttggaaagtgccaaacgataggatttttaacgatcttgtgaaagattcggga-gaaattgttgatgagattaaggtactctc 246  Q
    ||  ||  ||||||||||||||||||    ||| ||||||||||||||  ||||||||||||| ||| || |||||||||||||| |||||||| || |     
T  18847944 tgcggtattatggacgatttggaaagcaagaaatgataggatttttaataatcttgtgaaaga-tcgtgatgaaattgttgatgacattaaggtgctttg 18848042  T
Q  247 ttggagtttgacgctatctagattaaagagtcatgcttgcttctattacgagtggtgtttgaaccccaaagaatgtttactgagaaagctggggtaattt 346  Q
     |||| || | || |  ||||| | || |||| | | ||| |||||||||||||||||| ||||||||| |||||  || ||||| || ||||||| |||    
T  18848043 gtggaattgggcggttactagacttaaaagtcctccctgcctctattacgagtggtgttggaaccccaaggaatgcctattgagatagttggggtagttt 18848142  T
Q  347 tagaggtgtttgggacttttgg 368  Q
    |||||||||  |||||||||||    
T  18848143 tagaggtgtccgggacttttgg 18848164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 48 - 371
Target Start/End: Complemental strand, 42111322 - 42110999
Alignment:
Q  48 ttaattttattacacctcaatctttgtttcaacattttgaatgttggagcggggagattgggaagaaaaggctttgcaaaggctattggatggtttggca 147  Q
    ||||||||||||| |||||| |  | || ||||||||||| |||||||| |||||||||||||    || |||| | ||||| ||||||||| |||||||    
T  42111322 ttaattttattactcctcaaacgctcttccaacattttgagtgttggagtggggagattgggagactaaagcttcgtaaaggttattggatgatttggca 42111223  T
Q  148 tgttgtcctatggacgatttggaaagtgccaaacgataggatttttaacgatcttgtgaaagattcgggagaaattgttgatgagattaaggtactctct 247  Q
    ||  || || |||||||||||||||  |   || ||||||||||||||   | ||||||||||||  || |||||||||||||| |||||||| ||||||    
T  42111222 tgcggttctttggacgatttggaaaacgaggaatgataggatttttaattctattgtgaaagattatggggaaattgttgatgacattaaggtgctctct 42111123  T
Q  248 tggagtttgacgctatctagattaaagagtcatgcttgcttctattacgagtggtgtttgaaccccaaagaatgtttactgagaaagctggggtaatttt 347  Q
    |||| || | || |  | ||| | ||||||| |   ||| ||| ||  |||||||||| ||||||||| ||||| || ||  || || ||||||| ||||    
T  42111122 tggaattgggcgattacaagacttaagagtcctcactgcctcttttttgagtggtgttggaaccccaaggaatgcttgctccgacaggtggggtagtttt 42111023  T
Q  348 agaggtgtttgggacttttggtgt 371  Q
    ||||||||  ||||||||||||||    
T  42111022 agaggtgtccgggacttttggtgt 42110999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 55328940 - 55329002
Alignment:
Q  48 ttaattttattacacctcaatctttgtttcaacattttgaatgttggagcggggagattggga 110  Q
    ||||||| ||||||||||||||| | |||||||||||||| |||||||  |||||||| ||||    
T  55328940 ttaatttcattacacctcaatctctttttcaacattttgagtgttggaatggggagataggga 55329002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 355
Target Start/End: Original strand, 55329174 - 55329247
Alignment:
Q  282 cttgcttctattacgagtggtgtttgaaccccaaagaatgtttactgagaaagctggggtaattttagaggtgt 355  Q
    ||||| |||||||||||||||||| ||||| ||| ||||| ||| ||||| || ||||| | ||||||||||||    
T  55329174 cttgcctctattacgagtggtgttggaacctcaaggaatgcttattgagataggtggggcagttttagaggtgt 55329247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 80 - 367
Target Start/End: Original strand, 48888002 - 48888289
Alignment:
Q  80 cattttgaatgttggagcggggagattgggaagaaaaggctttgcaaaggctattggatggtttggcatgttgtcctatggacgatttggaaagtgccaa 179  Q
    |||||||| |||||||  ||||||||||||| |  || |||| ||||||| ||||||||| |||||||||| ||| ||||||||||||||||||  |  |    
T  48888002 cattttgagtgttggaatggggagattgggaggcgaaagcttcgcaaagggtattggatgatttggcatgtggtcttatggacgatttggaaagctcgga 48888101  T
Q  180 acgataggatttttaacgatcttgtgaaagattcgggagaaattgttgatgagattaaggtactctcttggagtttgacgctatctagattaaagagtca 279  Q
    | ||||| ||||| ||    || |||||||| |  || ||||| |||||||| |||||||| ||||| |||| || |  |   |||||| |||||||||     
T  48888102 atgatagaattttcaagtcactagtgaaagagttcggtgaaatggttgatgatattaaggtgctctcgtggaattgggtgaattctagactaaagagtcc 48888201  T
Q  280 tgcttgcttctattacgagtggtgtttgaaccccaaagaatgtttactgagaaagctggggtaattttagaggtgtttgggacttttg 367  Q
    | ||||| |||||||||||||||||| ||||||||| |||||| |  |||||  | ||||||| || |||||||||  ||||||||||    
T  48888202 tccttgcctctattacgagtggtgttggaaccccaaggaatgtcttttgagattggtggggtagttctagaggtgtccgggacttttg 48888289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 263 - 371
Target Start/End: Complemental strand, 19883566 - 19883458
Alignment:
Q  263 tctagattaaagagtcatgcttgcttctattacgagtggtgtttgaaccccaaagaatgtttactgagaaagctggggtaattttagaggtgtttgggac 362  Q
    |||||| ||||||||| | | ||| |||||||||||||||||| ||||||||| ||||||||| ||||| || ||||||| ||||||||||||  |||||    
T  19883566 tctagactaaagagtcctccgtgcctctattacgagtggtgttggaaccccaaggaatgtttattgagatagttggggtagttttagaggtgtccgggac 19883467  T
Q  363 ttttggtgt 371  Q
    | |||||||    
T  19883466 tcttggtgt 19883458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 19883654 - 19883594
Alignment:
Q  56 attacacctcaatctttgtttcaacattttgaatgttggagcggggagattgggaagaaaa 116  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  19883654 attacacctcaatctctgtttcaacattttgaatgttggagtggggagattgggaagaaaa 19883594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 6231999 - 6232059
Alignment:
Q  50 aattttattacacctcaatctttgtttcaacattttgaatgttggagcggggagattggga 110  Q
    ||||| ||||||||||||||  | |||||||||||||| |||||||  |||||||||||||    
T  6231999 aatttcattacacctcaatccctttttcaacattttgagtgttggaatggggagattggga 6232059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 371
Target Start/End: Complemental strand, 29254073 - 29254019
Alignment:
Q  317 gaatgtttactgagaaagctggggtaattttagaggtgtttgggacttttggtgt 371  Q
    |||||||||||| || || ||||| | ||||||||||| ||||||||||||||||    
T  29254073 gaatgtttactgcgatagttggggcagttttagaggtggttgggacttttggtgt 29254019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 367
Target Start/End: Original strand, 6232237 - 6232317
Alignment:
Q  288 tctattacgagtggtgtttgaaccccaaagaatgtttactgaga-aagctggggtaattttagaggtgtttgggacttttg 367  Q
    |||||||||||||||| | ||||||||| ||||| ||| ||||| ||  ||||| | ||||||||||||  ||||||||||    
T  6232237 tctattacgagtggtgctggaaccccaaggaatgcttattgagataatgtggggcagttttagaggtgtccgggacttttg 6232317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 48 - 371
Target Start/End: Original strand, 44684261 - 44684584
Alignment:
Q  48 ttaattttattacacctcaatctttgtttcaacattttgaatgttggagcggggagattgggaagaaaaggctttgcaaaggctattggatggtttggca 147  Q
    ||||||||||||| |||||| |  | || ||||||||||| |||||||| ||||||| |||||    || |||  | ||||| ||||||||| |||||||    
T  44684261 ttaattttattactcctcaaacgctcttccaacattttgagtgttggagtggggagactgggagactaaagctccgtaaaggttattggatgatttggca 44684360  T
Q  148 tgttgtcctatggacgatttggaaagtgccaaacgataggatttttaacgatcttgtgaaagattcgggagaaattgttgatgagattaaggtactctct 247  Q
    ||  || || |||||||| ||||||  |   || ||||||||||||||   | |||||||||||   || |||||||||||||| |||||||| ||||||    
T  44684361 tgcagttctctggacgatctggaaaacgaggaatgataggatttttaattctattgtgaaagatcatggggaaattgttgatgacattaaggtgctctct 44684460  T
Q  248 tggagtttgacgctatctagattaaagagtcatgcttgcttctattacgagtggtgtttgaaccccaaagaatgtttactgagaaagctggggtaatttt 347  Q
    |||| || | || |  | | | | ||||||| | | ||| ||| ||| |||||||||| ||||||||| ||||| || ||  || || ||||||| ||||    
T  44684461 tggaattgggcgattacaaaacttaagagtcctccctgcctcttttatgagtggtgttggaaccccaaggaatgcttgctccgacaggtggggtagtttt 44684560  T
Q  348 agaggtgtttgggacttttggtgt 371  Q
    |||||||| |||||||||||||||    
T  44684561 agaggtgtctgggacttttggtgt 44684584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 369
Target Start/End: Original strand, 42202481 - 42202800
Alignment:
Q  50 aattttattacacctcaatctttgtttcaacattttgaatgttggagcggggagattgggaagaaaaggctttgcaaaggctattggatggtttggcatg 149  Q
    ||||| |||||||| |||||| | ||||||||||||||||||||||  ||||| ||||||| ||  |  ||| | ||||| |||||| || | |||||||    
T  42202481 aatttcattacaccgcaatctctttttcaacattttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatg 42202580  T
Q  150 ttgtcctatggacgatttggaaagtgccaaacgataggatttttaacgatcttgtgaaagattcgggagaaattgttgatgagattaaggtactctcttg 249  Q
      ||  ||||| ||||||||||||  |  || ||||||||||| ||  || |  |||| ||||  || ||||| ||||| || ||||||||  | |  ||    
T  42202581 cggttttatggtcgatttggaaagcccggaatgataggattttcaataatttaatgaaggattatggtgaaatagttgaggaaattaaggtgattttgtg 42202680  T
Q  250 gagtttgacgctatctagattaaagagtcatgcttgcttctattacgagtggtgtttgaaccccaaagaatgtttactgagaaagctggggtaattttag 349  Q
    || || |  |   |||||| | ||||||| | ||||| |||||||||||||||||| |||||| |  ||||| ||| ||||| || ||||| | ||||||    
T  42202681 gaattgggtgaattctagacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggcagttttag 42202780  T
Q  350 aggtgtttgggacttttggt 369  Q
    |||||| |||||||| ||||    
T  42202781 aggtgtctgggacttatggt 42202800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 317
Target Start/End: Complemental strand, 3578147 - 3578043
Alignment:
Q  213 cgggagaaattgttgatgagattaaggtactctcttggagtttgacgctatctagattaaagagtcatgcttgcttctattacgagtggtgtttgaaccc 312  Q
    |||| |||||||| || || || ||||| ||||||||| ||| | | |||||||||||||| |||| |  |||| ||| |||||||||||||| ||||||    
T  3578147 cgggtgaaattgtggaggaaatcaaggttctctcttggcgttgggctctatctagattaaatagtcctctttgcctcttttacgagtggtgttggaaccc 3578048  T
Q  313 caaag 317  Q
    |||||    
T  3578047 caaag 3578043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 149
Target Start/End: Complemental strand, 25968138 - 25968039
Alignment:
Q  50 aattttattacacctcaatctttgtttcaacattttgaatgttggagcggggagattgggaagaaaaggctttgcaaaggctattggatggtttggcatg 149  Q
    |||||||||||||| ||  | ||||| ||||| |||||||||||||| || |||||||||||||| || ||| | ||||| |||||| |||  |||||||    
T  25968138 aattttattacaccacagaccttgttccaacactttgaatgttggagtggagagattgggaagaagagacttcgtaaaggttattggttggcgtggcatg 25968039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 353
Target Start/End: Complemental strand, 25967927 - 25967835
Alignment:
Q  261 tatctagattaaagagtcatgcttgcttctattacgagtggtgtttgaaccccaaagaatgtttactgagaaagctggggtaattttagaggt 353  Q
    ||||||||||||| |||| | ||||| ||| |||||||||| | | |||||||||||| |||||  | ||| ||| |||| | ||||||||||    
T  25967927 tatctagattaaaaagtcctccttgcctcttttacgagtggagctggaaccccaaagagtgtttgttaagatagcgggggcagttttagaggt 25967835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 48 - 371
Target Start/End: Original strand, 968 - 1291
Alignment:
Q  48 ttaattttattacacctcaatctttgtttcaacattttgaatgttggagcggggagattgggaagaaaaggctttgcaaaggctattggatggtttggca 147  Q
    ||||||||| ||| |||||| |  | || ||||||||||| |||||||| |||||||||||||    || |||  | ||||| ||||||||| |||||||    
T  968 ttaattttaatactcctcaaacgctcttccaacattttgagtgttggagtggggagattgggagactaaagctccgtaaaggttattggatgatttggca 1067  T
Q  148 tgttgtcctatggacgatttggaaagtgccaaacgataggatttttaacgatcttgtgaaagattcgggagaaattgttgatgagattaaggtactctct 247  Q
    ||  || || |||||||| ||||||  |   || ||||||||||||||   | ||||||||||||  || |||||||||||||| |||||||| ||| ||    
T  1068 tgcggttctttggacgatctggaaaacgaggaatgataggatttttaattctattgtgaaagattatggggaaattgttgatgacattaaggtgctccct 1167  T
Q  248 tggagtttgacgctatctagattaaagagtcatgcttgcttctattacgagtggtgtttgaaccccaaagaatgtttactgagaaagctggggtaatttt 347  Q
    |||| || | || |  | ||| | ||||||| | | ||| ||| ||| |||||||||| ||| ||||| ||||| || ||  || || ||||||| ||||    
T  1168 tggaattgggcgattacaagacttaagagtcctccctgcctcttttatgagtggtgttggaagcccaaggaatgcttgctccgacaggtggggtagtttt 1267  T
Q  348 agaggtgtttgggacttttggtgt 371  Q
    ||||||||  ||||||||||||||    
T  1268 agaggtgtccgggacttttggtgt 1291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 98 - 371
Target Start/End: Original strand, 16080291 - 16080564
Alignment:
Q  98 ggggagattgggaagaaaaggctttgcaaaggctattggatggtttggcatgttgtcctatggacgatttggaaagtgccaaacgataggatttttaacg 197  Q
    |||| ||| ||||||||||||||| || |||| | |||| |||| |||||||    ||| |||  ||||| |||||  |  |||||||||||||| ||      
T  16080291 ggggtgatcgggaagaaaaggcttcgcgaaggtttttggttggtgtggcatgcctccctctgggtgatttcgaaagcacggaacgataggattttcaata 16080390  T
Q  198 atcttgtgaaagattcgggagaaattgttgatgagattaaggtactctcttggagtttgacgctatctagattaaagagtcatgcttgcttctattacga 297  Q
    ||||| | ||||   |||| |||||||| ||  |||||||||| ||||||||| | | |  | |||||||||||||||||| | ||||| ||| ||| ||    
T  16080391 atcttattaaaggaccgggtgaaattgtggagcagattaaggtcctctcttggcgatgggtgttatctagattaaagagtcctccttgcctcttttatga 16080490  T
Q  298 gtggtgtttgaaccccaaagaatgtttactgagaaagctggggtaattttagaggtgtttgggacttttggtgt 371  Q
    |||||||| ||||||||| ||||||||  |||||||  ||||||| ||||||||||  | ||||||||| ||||    
T  16080491 gtggtgttggaaccccaaggaatgtttgatgagaaaattggggtagttttagaggttctagggactttttgtgt 16080564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 60 - 366
Target Start/End: Complemental strand, 9017709 - 9017400
Alignment:
Q  60 cacctcaatctttgtttcaacattttgaatgttggagcggggagattgggaagaaaaggctttgcaaaggctattggatggtttggcatgttgtcctatg 159  Q
    |||| ||||||||||||||||| |||||||||||||| || || |||| ||||||||| ||| | ||||| |||||| |||| |||||||     || ||    
T  9017709 caccccaatctttgtttcaacaatttgaatgttggagtggtgatattgagaagaaaagacttcgtaaagggtattggttggtgtggcatgcctctctttg 9017610  T
Q  160 gacgatttggaaagtgccaaacgataggatttttaacgatcttgtgaaagattcgggagaaattgttgatgagattaaggtactctcttggagtttgacg 259  Q
    || |||||||||||||   || ||||| ||||||||  ||||| | || ||  ||| ||| ||||| || ||  ||||||| ||||||||||| | |       
T  9017609 gatgatttggaaagtgtggaatgatagaatttttaataatcttattaaggagccggaagatattgtcgaggaagttaaggttctctcttggagatgggtt 9017510  T
Q  260 ctatctagattaaagag---tcatgcttgcttctattacgagtggtgtttgaaccccaaagaatgtttactgagaaagctggggtaattttagaggtgtt 356  Q
     |||||||| |||||||   || | ||||| |||  ||||| ||| ||| |||||||||||  ||||| || |||||   |||| | |||||||||| ||    
T  9017509 ttatctagactaaagagtgatcctccttgcctcttctacgattggagttggaaccccaaagcttgtttgcttagaaaataggggcagttttagaggtttt 9017410  T
Q  357 tgggactttt 366  Q
    ||||||||||    
T  9017409 tgggactttt 9017400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 38970838 - 38970900
Alignment:
Q  48 ttaattttattacacctcaatctttgtttcaacattttgaatgttggagcggggagattggga 110  Q
    ||||||| ||||||||||||||| | ||||| |||||||| |||||||  |||||||||||||    
T  38970838 ttaatttcattacacctcaatctctatttcatcattttgagtgttggaatggggagattggga 38970900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 331
Target Start/End: Original strand, 38971073 - 38971121
Alignment:
Q  283 ttgcttctattacgagtggtgtttgaaccccaaagaatgtttactgaga 331  Q
    |||| |||||||||||||||||| ||||||||||||||| ||| |||||    
T  38971073 ttgcctctattacgagtggtgttggaaccccaaagaatgcttattgaga 38971121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 48 - 368
Target Start/End: Original strand, 51361058 - 51361382
Alignment:
Q  48 ttaattttattacacctcaatctttgtttcaacattttgaatgttggagcggggagattgggaagaaaaggctttg----caaaggctattggatggttt 143  Q
    |||||||||||||||||||| |||||||| ||||||| ||||||||||| |||||||| || ||||||| ||||||     ||||| |||||| ||  ||    
T  51361058 ttaattttattacacctcaaactttgttttaacatttcgaatgttggagtggggagatgggaaagaaaaagctttgtaattaaagggtattggttgactt 51361157  T
Q  144 ggcatgttgtcctatggacgatttggaaagtgccaaacgataggatttttaacgatcttgtgaaagattcgggagaaattgttgatgagattaaggtact 243  Q
    ||||||  ||  |||||| ||| | |||||     || ||||||||||||||  |  |||| ||||||   || ||||||||| |||| |||||||| ||    
T  51361158 ggcatgcggtattatggatgatatagaaagcaaggaatgataggatttttaataagattgttaaagatcacggtgaaattgtttatgacattaaggtgct 51361257  T
Q  244 ctcttggagtttgacgctatctagattaaagagtcatgcttgcttctattacgagtggtgtttgaaccccaaagaatgtttactgagaaagctggggtaa 343  Q
     |  |||| || |||| |  ||||| | || |||  | | ||| ||||||| |||||||||| ||||||||| |||||  || ||||| || |||||||     
T  51361258 tttgtggaattggacggttactagactcaaaagttctccctgcctctattatgagtggtgttggaaccccaaggaatgcctattgagatagttggggtag 51361357  T
Q  344 ttttagaggtgtttgggacttttgg 368  Q
    ||||||||||||  |||||||||||    
T  51361358 ttttagaggtgtcagggacttttgg 51361382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 196
Target Start/End: Complemental strand, 380977 - 380831
Alignment:
Q  50 aattttattacacctcaatctttgtttcaacattttgaatgttggagcggggagattgggaagaaaaggctttgcaaaggctattggatggtttggcatg 149  Q
    ||||| ||||||||||||||  | |||||||||||||| |||||||  ||||||||||||| |   | || | | ||||| |||||| || ||||||| |    
T  380977 aatttcattacacctcaatccctttttcaacattttgagtgttggaatggggagattgggaggcgtaagcctcggaaaggttattggttgatttggcacg 380878  T
Q  150 ttgtcctatggacgatttggaaagtgccaaacgataggatttttaac 196  Q
      ||  ||||| ||||||||||||||  ||| |||||||| ||||||    
T  380877 cagtgttatggtcgatttggaaagtgagaaatgataggatctttaac 380831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 367
Target Start/End: Complemental strand, 380739 - 380659
Alignment:
Q  288 tctattacgagtggtgtttgaaccccaaagaatgtttactgaga-aagctggggtaattttagaggtgtttgggacttttg 367  Q
    |||||||||||||||| | ||||||||| ||||| ||| ||||| ||  ||||| | ||||||||||||  ||||||||||    
T  380739 tctattacgagtggtgctggaaccccaaggaatgcttattgagataacgtggggcagttttagaggtgtccgggacttttg 380659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University