View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9759_low_41 (Length: 214)
Name: NF9759_low_41
Description: NF9759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9759_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 29981959 - 29982139
Alignment:
| Q |
15 |
tttcgtgttcctcttgatgattctattagattgattaaggtaggaatgttgtaggtgctgtggaaacaagctagtatcctaagctccgtgtctggatctt |
114 |
Q |
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| T |
29981959 |
tttcgtgttcctcttgatgattctattagattgattaaggtaggaatgttgtaggtgctgtggaaacaagctagtatcctaagctccgtgtctggatctt |
29982058 |
T |
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| Q |
115 |
tgcgctgaatcgttttatgcatgtatggtgatcctctcctagctggtttatacactgccatcactattggtgtggtaatga |
195 |
Q |
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| T |
29982059 |
tgcgctgaatcgttttatgcatgtatggtgatcctctcctagctggtttatacactgccatcactattggtgtggtaatga |
29982139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 38 - 125
Target Start/End: Complemental strand, 8156063 - 8155967
Alignment:
| Q |
38 |
tattagattgattaaggtaggaatgttgtaggtgctg---------tggaaacaagctagtatcctaagctccgtgtctggatctttgcgctgaatc |
125 |
Q |
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| T |
8156063 |
tattagattgattaaggtaggaatgttgtaggtgctgaccgtgctatggaaacaagctagtatcctaagctcggtgtctggatctttgcgctgaatc |
8155967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 47370122 - 47370013
Alignment:
| Q |
15 |
tttcgtgttcctcttgatgattctattagattgattaaggtaggaatgttgtaggtgctgtggaaacaagctagtatcctaagctccgtgtctggatctt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47370122 |
tttcgtgttcctcttgatgattctattagattgattaaggtaggaatgttgtaggtgctgtggaaacaagctagtatcctaagctccgcgtctggatctt |
47370023 |
T |
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| Q |
115 |
tgcgctgaat |
124 |
Q |
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|||||||||| |
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| T |
47370022 |
tgcgctgaat |
47370013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 25523876 - 25523953
Alignment:
| Q |
15 |
tttcgtgttcctcttgatgattctattagattgattaaggtaggaatgttgtaggtgctgtggaaacaagctagtatc |
92 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25523876 |
tttcgtgttcctcttgatgattctattagattgattaaggtaggaatgttgtaggtgctgtggaaacaagctagtatc |
25523953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 36613653 - 36613730
Alignment:
| Q |
15 |
tttcgtgttcctcttgatgattctattagattgattaaggtaggaatgttgtaggtgctgtggaaacaagctagtatc |
92 |
Q |
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| T |
36613653 |
tttcgtgttcctcttgatgattctattagattgattaaggtaggaatgttgtaggtgttgtggaaacaagctagtatc |
36613730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 7674792 - 7674715
Alignment:
| Q |
15 |
tttcgtgttcctcttgatgattctattagattgattaaggtaggaatgttgtaggtgctgtggaaacaagctagtatc |
92 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
7674792 |
tttcgtgttcctcttgatgattctattagattgattaaggtaggagtgttgtaggtgctgttgaaacaagctagtatc |
7674715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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