View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9759_low_5 (Length: 441)
Name: NF9759_low_5
Description: NF9759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9759_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 36496591 - 36496162
Alignment:
| Q |
1 |
acattccaaaggattaatgaaccactcgtagaataagcacgaatatcctatcttcttgcaggttgatctatctaaaatattcattgtatattaatgtgtt |
100 |
Q |
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| T |
36496591 |
acattccaaaggattaatgaaccactcgtagaataagcacgaatatcctatcttcttgcaggttgatctatctaaaatattcattgtatattaatgtgtt |
36496492 |
T |
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| Q |
101 |
taacctaactttttcattctaag-----ataaattattatgtttagaaaaaatattaatgcacctaataatttacatagggagttcaagaggcactgctg |
195 |
Q |
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| T |
36496491 |
taacctaactttttcattctaagctaagataaattattatgtttagaaaaaatattaatgcacctaataatttacatagggagttcaagaggcactgctg |
36496392 |
T |
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| Q |
196 |
ggttgtgggttcaagctatggttgctgcattttattgtttcttcaatggtggcttgtaatcatatcagtcaaacatattatagttggtaacaaccttcat |
295 |
Q |
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| T |
36496391 |
ggttgtgggttcaagctatggttgctgcattttattgtttcttcaatggtggcttgtaatcatatcagtcaaacatattatagttggtaacaaccttcat |
36496292 |
T |
|
| Q |
296 |
actgtttatactttctctctcacatctttgttcaatacttgtttcttcattcccaacacccaaaatggaacaagaacatgatatcagactaagtttgtct |
395 |
Q |
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| T |
36496291 |
accgtttatactttctctctcacatctttgttcaatacttgtttcttcattcccaacacccaaaatggaacaagaacatgatatcagactaagtttgtct |
36496192 |
T |
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| Q |
396 |
ctagaagatttgggtttcaatgctgaaaat |
425 |
Q |
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| T |
36496191 |
ctagaagatttgggtttcaatgctgaaaat |
36496162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 326 - 425
Target Start/End: Complemental strand, 36467878 - 36467779
Alignment:
| Q |
326 |
ttcaatacttgtttcttcattcccaacacccaaaatggaacaagaacatgatatcagactaagtttgtctctagaagatttgggtttcaatgctgaaaat |
425 |
Q |
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| T |
36467878 |
ttcaatacttgtttcttcattcctaacacacaaaatggaacaagtaaataacaatagactatgtgtgtctatggaagagttaggtttcaatgctgaaaat |
36467779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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