View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9759_low_6 (Length: 407)
Name: NF9759_low_6
Description: NF9759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9759_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 36743796 - 36743405
Alignment:
| Q |
1 |
tttttgagcttaaaagttattttgataccgaagttaaaaatagtaaagttaaagttgtttggtaccttattggcaaagaaaattcggtccttgcgatatt |
100 |
Q |
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| T |
36743796 |
tttttgagcttaaaagttattttgataccgaagttaaaaataataaagttaaagttgtttggtaccttattggcaaagaaaattcggtccttgcgatatt |
36743697 |
T |
|
| Q |
101 |
gtttagcattgtaaacccatgagttgcaaagaaatgtaatggaatcatgaccaggtatgtcttcaagagttaaactgacaaggtagaactcaccttgtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36743696 |
gtttagcattgtaaacccatgagttgcaaagaaatgtaatggaatcatgaccaggtatgtcttcaagagttaaactgacaaggtagaactcaccttgtgt |
36743597 |
T |
|
| Q |
201 |
ataatttttaatgtaaaatgcacctggtattccaaaatcattatcccattcaaaataaacactgaatgcatcttgtcttgctgccaaggttggtaaaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36743596 |
ataatttttaatgtaaaatgcacctggtattccaaaatcattatcccattcaaaataaacactgaatgcatcttgtcttgctgccaaggttggtaaaaaa |
36743497 |
T |
|
| Q |
301 |
ggaatacgtttctccagaaagaactgatctccaacaaacccatttcccattcctaaaataataattaaaaagattagttagcttatgatttg |
392 |
Q |
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| T |
36743496 |
ggaatacgtttctccagaaagaactgatctccaacaaacccatttcccattcctaaaataataattaaaaagattagttagcttatgatttg |
36743405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 160 - 296
Target Start/End: Original strand, 6458686 - 6458822
Alignment:
| Q |
160 |
tcttcaagagttaaactgacaaggtagaactcaccttgtgtataatttttaatgtaaaatgcacctggtattccaaaatcattatcccattcaaaataaa |
259 |
Q |
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||||||||||| | ||| |||||| |||| ||| |||||||||||||| | ||||||||||| || ||||||||||||| | ||| ||||||| ||| |
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| T |
6458686 |
tcttcaagagtcacactaacaaggaagaattcagcttgtgtataatttcttatgtaaaatgctccaggtattccaaaattagcatcatattcaaagaaaa |
6458785 |
T |
|
| Q |
260 |
cactgaatgcatcttgtcttgctgccaaggttggtaa |
296 |
Q |
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| T |
6458786 |
cactgaatgcatcttgtcttgctcccaaagttggtaa |
6458822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 178 - 296
Target Start/End: Original strand, 6452526 - 6452644
Alignment:
| Q |
178 |
acaaggtagaactcaccttgtgtataatttttaatgtaaaatgcacctggtattccaaaatcattatcccattcaaaataaacactgaatgcatcttgtc |
277 |
Q |
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|||||| |||||||| |||||||||||||| | ||||||||||| ||||| |||||||| | | ||| ||||||| ||| ||||||||||||||||| |
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| T |
6452526 |
acaaggaagaactcagcttgtgtataatttcttatgtaaaatgctcctgggattccaaagttagcatcatattcaaagaaaatactgaatgcatcttgtc |
6452625 |
T |
|
| Q |
278 |
ttgctgccaaggttggtaa |
296 |
Q |
| |
|
||||| |||| |||||||| |
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| T |
6452626 |
ttgctcccaaagttggtaa |
6452644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 211 - 295
Target Start/End: Complemental strand, 9602815 - 9602731
Alignment:
| Q |
211 |
atgtaaaatgcacctggtattccaaaatcattatcccattcaaaataaacactgaatgcatcttgtcttgctgccaaggttggta |
295 |
Q |
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||||||||||| ||||| |||||||||||| |||||| ||||| | || ||| |||||||||||||||||| |||||||||||| |
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| T |
9602815 |
atgtaaaatgctcctgggattccaaaatcagcatcccaatcaaagtgaatactaaatgcatcttgtcttgctcccaaggttggta |
9602731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 292
Target Start/End: Original strand, 32024078 - 32024163
Alignment:
| Q |
211 |
atgtaaaatgcacctggtattccaaaa----tcattatcccattcaaaataaacactgaatgcatcttgtcttgctgccaaggttg |
292 |
Q |
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||||||||||| ||||| ||||||||| ||||||||||| ||||| | || ||| ||||| |||||||||||| |||| |||| |
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| T |
32024078 |
atgtaaaatgctcctgggattccaaaatcattcattatcccaatcaaagtgaatactaaatgcttcttgtcttgctcccaaagttg |
32024163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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