View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9759_low_7 (Length: 396)
Name: NF9759_low_7
Description: NF9759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9759_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 388
Target Start/End: Original strand, 5434281 - 5434651
Alignment:
| Q |
19 |
agaagagctccttagaaaaactaagaaacaagtcaagaatcatcaatagtgaaggacattgaatttcgacatttaaatatagatgaaaatgttaaaaccc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5434281 |
agaagagctccttagaaaaactaagaaacaagtcaagaatcatcaatagtgaaggacattgaatttcgacatttaaatatagatgaaaatgttaaaaccc |
5434380 |
T |
|
| Q |
119 |
ttgatagaaatatacacaccgcaagaagatctccttnnnnnnn-gctacgaagcaggtccaggatgatctattgtgaaggacaatgaatttccacacttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5434381 |
ttgatagaaatatacacaccgcaagaagatctccttagaaaaaagctacgaagcaggtccaggatgatctattgtgaaggacaatgaatttccaaacttg |
5434480 |
T |
|
| Q |
218 |
aatatggatgaaaaatgtcaaaacccttttgtagaacaacattaaagcacatgaaaagaacagcctgtcttccttcatggaaagcaaaatcagaaacaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5434481 |
aatatggatgaaaaatgtcaaaacccttttgtagaacaacattaaagcacatgaaaagaacagcctgtcttccttcatggaaagcaaaatcagaaacaat |
5434580 |
T |
|
| Q |
318 |
caacaatgaaagcaaatatagaaaatagcctaaaacttaattctttttaatgcagaaaaaccacaacacca |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5434581 |
caacaatgaaagcaaatatagaaaatagcctaaaacttaattctttttaatgcagaaaaaccacaacacca |
5434651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 387
Target Start/End: Original strand, 536151 - 536210
Alignment:
| Q |
328 |
agcaaatatagaaaatagcctaaaacttaattctttttaatgcagaaaaaccacaacacc |
387 |
Q |
| |
|
||||||||||| ||| || ||||||||| ||| |||||| |||||||||||||||||||| |
|
|
| T |
536151 |
agcaaatatagcaaagagtctaaaacttcattgtttttagtgcagaaaaaccacaacacc |
536210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 376
Target Start/End: Complemental strand, 555385 - 555311
Alignment:
| Q |
303 |
aaaatcagaaacaatcaacaatgaaagcaaatatagaaaatagcctaaaa-cttaattctttttaatgcagaaaa |
376 |
Q |
| |
|
|||||||||| ||| |||||| | ||||||||| ||||| || |||||| ||| |||||||||||||||||||| |
|
|
| T |
555385 |
aaaatcagaagcaaacaacaaaggtagcaaatatggaaaacaggctaaaaacttcattctttttaatgcagaaaa |
555311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University