View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9759_low_8 (Length: 380)
Name: NF9759_low_8
Description: NF9759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9759_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 11 - 365
Target Start/End: Original strand, 3099555 - 3099909
Alignment:
| Q |
11 |
cagagacagagctgatatcaataccagcaacaccaagagtgtcaacaccagagatactgacaccatcaggacaaaggtcaccaagacaaggatcaaagga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3099555 |
cagagacagagctgatatcaataccagcaacaccaagagtgtcaacaccagagatactgacaccatcaggacaaaggtcaccaagacaaggatcaaagga |
3099654 |
T |
|
| Q |
111 |
agctaaatcatcaaatgcatggacaccaacatcttttatatcaccaaggtttttgagtcctatagggacaccaatgaaaagggtacttataaacatgaag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3099655 |
agctaaatcatcaaatgcatggacaccaacatcttttatatcaccaaggtttttgagtcctatagggacaccaatgaaaagggtacttataaacatgaag |
3099754 |
T |
|
| Q |
211 |
ggttatttggaagatgttggccatcttactaagcttaatcctcaagatgcatggcttccaattaccgagtctcggaatggaaatgctcattactctactt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3099755 |
ggttatttggaagatgttggccatcttactaagcttaatcctcaagatgcatggcttccaattaccgagtctcggaatggaaatgctcattactctactt |
3099854 |
T |
|
| Q |
311 |
ttcataacctcaatgctggtgttggttttcaggctcttgttttgcctgttgcttt |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3099855 |
ttcataacctcaatgctggtgttggttttcaggctcttgttttgcctgttgcttt |
3099909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University