View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9760_10 (Length: 357)

Name: NF9760_10
Description: NF9760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9760_10
NF9760_10
[»] chr7 (12 HSPs)
chr7 (8-357)||(33266246-33266595)
chr7 (124-198)||(19302482-19302556)
chr7 (128-196)||(9210902-9210970)
chr7 (122-205)||(11619070-11619153)
chr7 (16-77)||(119877-119938)
chr7 (122-198)||(4970711-4970787)
chr7 (8-72)||(45806524-45806588)
chr7 (151-198)||(44822062-44822109)
chr7 (160-203)||(47046022-47046065)
chr7 (157-206)||(37064379-37064428)
chr7 (122-198)||(18962502-18962578)
chr7 (170-206)||(40371565-40371601)
[»] chr4 (13 HSPs)
chr4 (148-206)||(27043741-27043799)
chr4 (126-197)||(15173223-15173294)
chr4 (152-198)||(42403942-42403988)
chr4 (151-198)||(41336864-41336911)
chr4 (151-198)||(54426147-54426194)
chr4 (123-196)||(22538998-22539071)
chr4 (8-77)||(7601718-7601787)
chr4 (151-196)||(52315118-52315163)
chr4 (153-198)||(53294033-53294078)
chr4 (149-198)||(55437178-55437227)
chr4 (152-204)||(35571544-35571596)
chr4 (8-68)||(42404049-42404109)
chr4 (148-192)||(49003800-49003844)
[»] chr5 (17 HSPs)
chr5 (153-198)||(39594913-39594958)
chr5 (59-198)||(12857257-12857398)
chr5 (159-208)||(14331478-14331527)
chr5 (151-204)||(34736440-34736493)
chr5 (124-203)||(32941546-32941626)
chr5 (148-208)||(35299866-35299926)
chr5 (151-207)||(41419423-41419479)
chr5 (151-207)||(41534542-41534598)
chr5 (168-207)||(14932417-14932456)
chr5 (151-197)||(9107194-9107240)
chr5 (159-205)||(12459913-12459959)
chr5 (151-196)||(7674751-7674796)
chr5 (151-208)||(7705907-7705964)
chr5 (169-206)||(9174938-9174975)
chr5 (16-97)||(16937905-16937986)
chr5 (151-195)||(11064770-11064814)
chr5 (155-195)||(22209746-22209786)
[»] chr2 (17 HSPs)
chr2 (122-198)||(27317454-27317530)
chr2 (155-198)||(31744406-31744449)
chr2 (122-198)||(4607000-4607076)
chr2 (122-198)||(18179024-18179100)
chr2 (124-204)||(23974406-23974486)
chr2 (126-198)||(30331830-30331902)
chr2 (148-198)||(15305775-15305825)
chr2 (148-204)||(2416414-2416470)
chr2 (151-207)||(3312181-3312237)
chr2 (124-196)||(42419870-42419942)
chr2 (151-206)||(39073613-39073668)
chr2 (16-70)||(41407042-41407096)
chr2 (159-200)||(22878210-22878251)
chr2 (159-196)||(28803451-28803488)
chr2 (168-204)||(6772446-6772482)
chr2 (151-207)||(7928208-7928264)
chr2 (160-200)||(18525158-18525198)
[»] chr8 (9 HSPs)
chr8 (151-198)||(38602431-38602478)
chr8 (124-198)||(30251373-30251447)
chr8 (8-207)||(10758167-10758367)
chr8 (124-196)||(43717855-43717927)
chr8 (124-203)||(36963268-36963347)
chr8 (159-209)||(16163261-16163311)
chr8 (151-199)||(1096594-1096642)
chr8 (170-206)||(5088243-5088279)
chr8 (134-206)||(29818855-29818927)
[»] chr6 (10 HSPs)
chr6 (151-204)||(21405067-21405120)
chr6 (122-204)||(10645298-10645380)
chr6 (8-70)||(18076155-18076217)
chr6 (12-70)||(24626258-24626316)
chr6 (153-198)||(35069531-35069576)
chr6 (155-199)||(4163261-4163305)
chr6 (155-199)||(4224882-4224926)
chr6 (168-200)||(31776189-31776221)
chr6 (161-205)||(33027706-33027750)
chr6 (124-199)||(33089582-33089658)
[»] chr3 (20 HSPs)
chr3 (124-197)||(584123-584196)
chr3 (124-197)||(24085258-24085331)
chr3 (125-202)||(34610721-34610798)
chr3 (151-198)||(16072960-16073007)
chr3 (151-198)||(25447164-25447211)
chr3 (12-95)||(36631075-36631158)
chr3 (124-198)||(42799885-42799960)
chr3 (8-74)||(5331252-5331318)
chr3 (161-199)||(26990143-26990181)
chr3 (8-74)||(29520524-29520590)
chr3 (162-204)||(31615473-31615515)
chr3 (159-209)||(44014317-44014367)
chr3 (151-196)||(18405752-18405797)
chr3 (155-196)||(26911699-26911740)
chr3 (16-97)||(30443860-30443941)
chr3 (163-204)||(32663754-32663795)
chr3 (154-195)||(33405114-33405155)
chr3 (12-97)||(35959478-35959563)
chr3 (124-197)||(51929277-51929350)
chr3 (160-204)||(20210841-20210885)
[»] chr1 (19 HSPs)
chr1 (12-77)||(14576695-14576760)
chr1 (122-198)||(50644174-50644250)
chr1 (132-197)||(24334280-24334345)
chr1 (148-197)||(39976130-39976179)
chr1 (8-194)||(13809957-13810145)
chr1 (136-192)||(38116002-38116058)
chr1 (159-198)||(6292604-6292643)
chr1 (151-198)||(33204313-33204360)
chr1 (124-198)||(2295173-2295247)
chr1 (136-198)||(2295280-2295342)
chr1 (136-198)||(14385712-14385774)
chr1 (8-77)||(28043589-28043659)
chr1 (8-69)||(33186225-33186286)
chr1 (125-198)||(36872806-36872879)
chr1 (157-198)||(41505784-41505825)
chr1 (122-198)||(3233934-3234010)
chr1 (8-40)||(9572187-9572219)
chr1 (9-73)||(26678863-26678927)
chr1 (17-77)||(37517236-37517296)


Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 8 - 357
Target Start/End: Complemental strand, 33266595 - 33266246
Alignment:
Q  8 tagcaaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagctacattagaaaaattacaaaaataagctgnnnnnnnctt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||    
T  33266595 tagcaaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagctacattagaaaaattacaaaaataagctgaaaaaaactt 33266496  T
Q  108 ttgcgaattgtcatgttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaacatacccttag 207  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33266495 ttgcgaattgtcatgttgttttcgtaaattctcccaaatagtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacatacccttag 33266396  T
Q  208 attgaaactccatggtcattatacctgtaattttttcaacttcttcaagttcaatacgaataaatgtgactccaacttgcccaaattaaccatgagtttg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33266395 attgaaactccatggtcattatacctgtaattttttcaacttcttcaagttcaatacgaataaatgtgactccaacttgcccaaattaaccatgagtttg 33266296  T
Q  308 atagtcatttgattggtgaagaggatgctcataaacgtgactccaactcg 357  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33266295 atagtcatttgatcggtgaagaggatgctcataaacgtgactccaactcg 33266246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 198
Target Start/End: Complemental strand, 19302556 - 19302482
Alignment:
Q  124 tgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaaca 198  Q
    ||||||| |||||||||| ||||  | |||||||||||||||| |||||||||| ||||||||||||| ||||||    
T  19302556 tgttttcataaattctcccaaatattctcacaaaacttatgtcagtagataagctcaaataagtcaattcaaaca 19302482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 9210902 - 9210970
Alignment:
Q  128 ttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaa 196  Q
    |||||||||||||| |||  || ||| ||||||||| || |||||||||| ||||||||||||||||||    
T  9210902 ttcgtaaattctcccaaacagtctcagaaaacttatatcagtagataagctcaaataagtcaatccaaa 9210970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 205
Target Start/End: Complemental strand, 11619153 - 11619070
Alignment:
Q  122 gttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaacataccctt 205  Q
    ||||||||| |||||||||| ||   ||||||  || |||||||| |||||||||| |||||||| ||||||||||| ||||||    
T  11619153 gttgttttcataaattctcccaatctgtttcatgaagcttatgtcagtagataagctcaaataagccaatccaaacaaaccctt 11619070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 119877 - 119938
Alignment:
Q  16 gataaaataaagttaaattgcttttctacatcctataagttctttttataagctacattaga 77  Q
    |||||||||||||||||||| || | || || ||||||||| |||||||||| |||||||||    
T  119877 gataaaataaagttaaattgtttgtgtaaatgctataagttgtttttataagttacattaga 119938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 4970787 - 4970711
Alignment:
Q  122 gttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaaca 198  Q
    ||||||||| ||| |||||| |||  || |||||| |||||||||   |||||||| ||||||||||||||||||||    
T  4970787 gttgttttcataagttctcccaaacagtctcacaagacttatgtcacgagataagctcaaataagtcaatccaaaca 4970711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 45806588 - 45806524
Alignment:
Q  8 tagcaaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagctaca 72  Q
    ||||||| || ||||||| ||||||||| |||||||  | ||||||||| |||||||||||||||    
T  45806588 tagcaaaagagaaaataacgttaaattgtttttctaattgctataagttgtttttataagctaca 45806524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 198
Target Start/End: Original strand, 44822062 - 44822109
Alignment:
Q  151 tcacaaaacttatgtcggtagataagcccaaataagtcaatccaaaca 198  Q
    |||||||||||||||| | |||||| | ||||||||||||||||||||    
T  44822062 tcacaaaacttatgtcagcagataaactcaaataagtcaatccaaaca 44822109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 47046065 - 47046022
Alignment:
Q  160 ttatgtcggtagataagcccaaataagtcaatccaaacataccc 203  Q
    ||||||| |||||||||| |||||||||||||||||||| ||||    
T  47046065 ttatgtcagtagataagcacaaataagtcaatccaaacagaccc 47046022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 37064428 - 37064379
Alignment:
Q  157 aacttatgtcggtagataagcccaaataagtcaatccaaacataccctta 206  Q
    ||||||| || |||||||||  |||||||||||||||||||| |||||||    
T  37064428 aacttatatcagtagataagatcaaataagtcaatccaaacagaccctta 37064379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 18962578 - 18962502
Alignment:
Q  122 gttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaaca 198  Q
    |||| |||| ||| ||||||||||  || | |||||||||||||| |||||||||  | ||||| ||||||||||||    
T  18962578 gttggtttcataagttctccaaaacagtctaacaaaacttatgtcagtagataagatcgaataactcaatccaaaca 18962502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 40371601 - 40371565
Alignment:
Q  170 agataagcccaaataagtcaatccaaacataccctta 206  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  40371601 agataagctcaaataagtcaatccaaacatgccctta 40371565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 27043799 - 27043741
Alignment:
Q  148 gtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaacataccctta 206  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||    
T  27043799 gtttcacaaaacttatgtcagtagataagctcaaataagtcaatccaaacagaccctta 27043741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 15173294 - 15173223
Alignment:
Q  126 ttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaac 197  Q
    ||||| |||| ||||| |||  || |||||||||||||||| |||||||||  |||||||||||||||||||    
T  15173294 ttttcataaagtctcccaaacagtctcacaaaacttatgtcagtagataagttcaaataagtcaatccaaac 15173223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 42403988 - 42403942
Alignment:
Q  152 cacaaaacttatgtcggtagataagcccaaataagtcaatccaaaca 198  Q
    ||||||||||||||| || ||||||| ||||||||||||||||||||    
T  42403988 cacaaaacttatgtcagttgataagctcaaataagtcaatccaaaca 42403942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 198
Target Start/End: Original strand, 41336864 - 41336911
Alignment:
Q  151 tcacaaaacttatgtcggtagataagcccaaataagtcaatccaaaca 198  Q
    |||||||||||||||  |||||||| | ||||||||||||||||||||    
T  41336864 tcacaaaacttatgtgagtagataaactcaaataagtcaatccaaaca 41336911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 198
Target Start/End: Original strand, 54426147 - 54426194
Alignment:
Q  151 tcacaaaacttatgtcggtagataagcccaaataagtcaatccaaaca 198  Q
    |||||||||||||| | |||||||||| |||||||| |||||||||||    
T  54426147 tcacaaaacttatgccagtagataagctcaaataagccaatccaaaca 54426194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 22539071 - 22538998
Alignment:
Q  123 ttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagcccaaa-taagtcaatccaaa 196  Q
    |||||||||||| |||||| |||| || |||| ||||||||| | |||||||||| |||| ||||||||||||||    
T  22539071 ttgttttcgtaagttctcccaaattgtctcac-aaacttatgccagtagataagctcaaagtaagtcaatccaaa 22538998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 7601718 - 7601787
Alignment:
Q  8 tagcaaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagctacattaga 77  Q
    |||||||||||||||||||||||||||| |||| || ||  ||| |||  ||||||||| ||| ||||||    
T  7601718 tagcaaaggataaaataaagttaaattgtttttgtatatgttatgagtagtttttataaactatattaga 7601787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 52315163 - 52315118
Alignment:
Q  151 tcacaaaacttatgtcggtagataagcccaaataagtcaatccaaa 196  Q
    |||||||||||| ||| |||||||| | ||||||||||||||||||    
T  52315163 tcacaaaacttacgtcagtagataaactcaaataagtcaatccaaa 52315118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 53294078 - 53294033
Alignment:
Q  153 acaaaacttatgtcggtagataagcccaaataagtcaatccaaaca 198  Q
    |||||||| ||||| |||||||||| ||||| ||||||||||||||    
T  53294078 acaaaactcatgtcagtagataagcacaaattagtcaatccaaaca 53294033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 55437178 - 55437227
Alignment:
Q  149 tttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaaca 198  Q
    |||||||||||||||| | |||||||| | |||||||| |||||||||||    
T  55437178 tttcacaaaacttatggcagtagataaactcaaataagccaatccaaaca 55437227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 35571596 - 35571544
Alignment:
Q  152 cacaaaacttatgtcggtagataagcccaaataagtcaatccaaacataccct 204  Q
    |||||||||||||   |||||||||| |||||||| ||||||||||| |||||    
T  35571596 cacaaaacttatgctagtagataagctcaaataagccaatccaaacagaccct 35571544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 42404109 - 42404049
Alignment:
Q  8 tagcaaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagc 68  Q
    ||||||| |||||||||| ||||||||| |||| ||||| || |||| | |||||||||||    
T  42404109 tagcaaaagataaaataatgttaaattgtttttgtacatgctgtaagctgtttttataagc 42404049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 49003844 - 49003800
Alignment:
Q  148 gtttcacaaaacttatgtcggtagataagcccaaataagtcaatc 192  Q
    ||||||||||||||| ||| || ||||||| ||||||||||||||    
T  49003844 gtttcacaaaacttacgtcagtggataagctcaaataagtcaatc 49003800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 39594913 - 39594958
Alignment:
Q  153 acaaaacttatgtcggtagataagcccaaataagtcaatccaaaca 198  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  39594913 acaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 39594958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 198
Target Start/End: Complemental strand, 12857398 - 12857257
Alignment:
Q  59 ttttataagctacattagaaaaattacaaaaataagctgnnnnnnncttttgcgaattgtcat--gttgttttcgtaaattctccaaaatggtttcacaa 156  Q
    |||||||||||| ||| || || ||||||||||||||||       ||| ||  |||||||||  ||||||||| ||| ||||||  ||  |||||||||    
T  12857398 ttttataagctatattggagaacttacaaaaataagctgaaaaaagcttgtgaaaattgtcataagttgttttcataagttctccggaaaagtttcacaa 12857299  T
Q  157 aacttatgtcggtagataagcccaaataagtcaatccaaaca 198  Q
    |||||| |||  ||||||||| |||||||  |||||||||||    
T  12857298 aacttacgtcaatagataagctcaaataaaccaatccaaaca 12857257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 14331478 - 14331527
Alignment:
Q  159 cttatgtcggtagataagcccaaataagtcaatccaaacatacccttaga 208  Q
    |||||| | |||||||||| |||||||||||||||||||| |||||||||    
T  14331478 cttatgacagtagataagctcaaataagtcaatccaaacagacccttaga 14331527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 34736493 - 34736440
Alignment:
Q  151 tcacaaaacttatgtcggtagataagcccaaataagtcaatccaaacataccct 204  Q
    ||||||||||||||||   |||||||| ||||||||||||||||||||| ||||    
T  34736493 tcacaaaacttatgtcaccagataagctcaaataagtcaatccaaacatgccct 34736440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 32941546 - 32941626
Alignment:
Q  124 tgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataa-gcccaaataagtcaatccaaacataccc 203  Q
    ||||||| ||| |||||| ||| ||| ||||| |||||||||| |||||||| || | |||||||||||||||||| ||||    
T  32941546 tgttttcataagttctcccaaacggtctcacagaacttatgtcagtagataaagctctaataagtcaatccaaacagaccc 32941626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 35299866 - 35299926
Alignment:
Q  148 gtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaacatacccttaga 208  Q
    ||||| ||||||| |||||  ||||||||| ||||||||||||||||||||  ||||||||    
T  35299866 gtttctcaaaactcatgtcaatagataagctcaaataagtcaatccaaacaggcccttaga 35299926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 41419423 - 41419479
Alignment:
Q  151 tcacaaaacttatgtcggtagataagcccaaataagtcaatccaaacatacccttag 207  Q
    |||||||| ||||||| |||||| ||| |||||||||||||||||||| || |||||    
T  41419423 tcacaaaatttatgtcagtagattagctcaaataagtcaatccaaacaaacacttag 41419479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 41534542 - 41534598
Alignment:
Q  151 tcacaaaacttatgtcggtagataagcccaaataagtcaatccaaacatacccttag 207  Q
    |||||||| ||||||| |||||| ||| |||||||||||||||||||| || |||||    
T  41534542 tcacaaaatttatgtcagtagattagctcaaataagtcaatccaaacaaacacttag 41534598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 207
Target Start/End: Original strand, 14932417 - 14932456
Alignment:
Q  168 gtagataagcccaaataagtcaatccaaacatacccttag 207  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  14932417 gtagataagctcaaataagtcaatccaaacatactcttag 14932456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 9107194 - 9107240
Alignment:
Q  151 tcacaaaacttatgtcggtagataagcccaaataagtcaatccaaac 197  Q
    ||||||||||||||||  ||||||| | |||||||||||||||||||    
T  9107194 tcacaaaacttatgtcactagataaactcaaataagtcaatccaaac 9107240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 12459959 - 12459913
Alignment:
Q  159 cttatgtcggtagataagcccaaataagtcaatccaaacataccctt 205  Q
    |||||||| | ||||||||| ||||||||||||||||||| ||||||    
T  12459959 cttatgtcagcagataagccgaaataagtcaatccaaacagaccctt 12459913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 7674751 - 7674796
Alignment:
Q  151 tcacaaaacttatgtcggtagataagcccaaataagtcaatccaaa 196  Q
    |||||||||||| || ||||||||||| |||||||| |||||||||    
T  7674751 tcacaaaacttaagtaggtagataagctcaaataagccaatccaaa 7674796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 7705964 - 7705907
Alignment:
Q  151 tcacaaaacttatgtcggtagataagcccaaataagtcaatccaaacatacccttaga 208  Q
    ||||||||||||||   ||||||| || ||||||||||||||||||||  ||||||||    
T  7705964 tcacaaaacttatgctagtagatatgctcaaataagtcaatccaaacaggcccttaga 7705907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 9174938 - 9174975
Alignment:
Q  169 tagataagcccaaataagtcaatccaaacataccctta 206  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  9174938 tagataagctcaaataagtcaatccaaacatgccctta 9174975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 16937986 - 16937905
Alignment:
Q  16 gataaaataaagttaaattgcttttctacatcctataagttctttttataagctacattagaaaaattacaaaaataagctg 97  Q
    |||||||||| ||||||||| |||| || || ||||||||| |||||||| |||| ||| || || |||  |||||||||||    
T  16937986 gataaaataacgttaaattgtttttgtatatgctataagttgtttttatacgctatattggagaacttaggaaaataagctg 16937905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 11064770 - 11064814
Alignment:
Q  151 tcacaaaacttatgtcggtagataagcccaaataagtcaatccaa 195  Q
    ||||||||||||||| ||||||||| | ||||||| |||||||||    
T  11064770 tcacaaaacttatgttggtagataaactcaaataaatcaatccaa 11064814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 22209786 - 22209746
Alignment:
Q  155 aaaacttatgtcggtagataagcccaaataagtcaatccaa 195  Q
    |||||||||| | |||||||||| |||||||||||||||||    
T  22209786 aaaacttatgccagtagataagctcaaataagtcaatccaa 22209746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 27317454 - 27317530
Alignment:
Q  122 gttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaaca 198  Q
    ||||||||| ||| |||||  |||  || ||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  27317454 gttgttttcataagttctctcaaacagtctcataaaacttatgtcggtagataagctcaaataagtcaatccaaaca 27317530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 31744406 - 31744449
Alignment:
Q  155 aaaacttatgtcggtagataagcccaaataagtcaatccaaaca 198  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  31744406 aaaacttatgtcggtagataagcccaaataagccaatccaaaca 31744449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 4607000 - 4607076
Alignment:
Q  122 gttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaaca 198  Q
    |||||||||  || |||||| |||| || ||||||||||||| | ||||||||||| |||||||| |||||||||||    
T  4607000 gttgttttcacaagttctcccaaatagtctcacaaaacttatattggtagataagctcaaataagccaatccaaaca 4607076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 18179024 - 18179100
Alignment:
Q  122 gttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaaca 198  Q
    ||||||||||||| |||||   |  ||| |||||||||||||||  |||||||||| ||||||||||||||||||||    
T  18179024 gttgttttcgtaagttctcttgagcggtctcacaaaacttatgttagtagataagctcaaataagtcaatccaaaca 18179100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 124 - 204
Target Start/End: Complemental strand, 23974486 - 23974406
Alignment:
Q  124 tgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaacataccct 204  Q
    ||||||| ||| ||||||||||   | |||| || || ||||| |||||||| ||||||||||||||||||||||||||||    
T  23974486 tgttttcataagttctccaaaacaatctcactaatctcatgtcagtagataaacccaaataagtcaatccaaacataccct 23974406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 30331830 - 30331902
Alignment:
Q  126 ttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaaca 198  Q
    ||||| ||| |||||| |||  || |||||||||||||||| ||||||||||  |||||||||||||||||||    
T  30331830 ttttcataagttctcccaaacagtctcacaaaacttatgtcagtagataagctgaaataagtcaatccaaaca 30331902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 15305775 - 15305825
Alignment:
Q  148 gtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaaca 198  Q
    |||||||||||||||||||  ||||||||| |||||||| |||||||||||    
T  15305775 gtttcacaaaacttatgtcaatagataagctcaaataagccaatccaaaca 15305825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 2416414 - 2416470
Alignment:
Q  148 gtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaacataccct 204  Q
    ||||||||||||||||||  |||||||| | |||||||||||||| |||||| ||||    
T  2416414 gtttcacaaaacttatgttagtagataaactcaaataagtcaatctaaacatgccct 2416470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 3312181 - 3312237
Alignment:
Q  151 tcacaaaacttatgtcggtagataagcccaaataagtcaatccaaacatacccttag 207  Q
    |||||||||||| ||| |||||||||| |||||||| |||||||||||  |||||||    
T  3312181 tcacaaaacttacgtcagtagataagctcaaataagccaatccaaacaagcccttag 3312237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 42419870 - 42419942
Alignment:
Q  124 tgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaa 196  Q
    ||||||||||| |||||| |||  || ||| |||||||||||| | |||||| | ||||||||||||||||||    
T  42419870 tgttttcgtaagttctcccaaacagtctcaaaaaacttatgtcagaagataaactcaaataagtcaatccaaa 42419942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 206
Target Start/End: Complemental strand, 39073668 - 39073613
Alignment:
Q  151 tcacaaaacttatgtcggtagataagcccaaataagtcaatccaaacataccctta 206  Q
    |||||||| |||||||||||||| | | ||||||| |||||| |||||||||||||    
T  39073668 tcacaaaaattatgtcggtagatgaactcaaataaatcaatctaaacataccctta 39073613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 41407042 - 41407096
Alignment:
Q  16 gataaaataaagttaaattgcttttctacatcctataagttctttttataagcta 70  Q
    ||||||||||||||||| ||||||| || || ||||||||| |||| ||||||||    
T  41407042 gataaaataaagttaaactgcttttgtatattctataagttgttttcataagcta 41407096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 22878210 - 22878251
Alignment:
Q  159 cttatgtcggtagataagcccaaataagtcaatccaaacata 200  Q
    |||||||| || ||||||| ||||||||||||||||||||||    
T  22878210 cttatgtcagtggataagctcaaataagtcaatccaaacata 22878251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 28803488 - 28803451
Alignment:
Q  159 cttatgtcggtagataagcccaaataagtcaatccaaa 196  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  28803488 cttatgccggtagataagctcaaataagtcaatccaaa 28803451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 6772482 - 6772446
Alignment:
Q  168 gtagataagcccaaataagtcaatccaaacataccct 204  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  6772482 gtagataagctcaaataagtcaatccaaacatgccct 6772446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 7928264 - 7928208
Alignment:
Q  151 tcacaaaacttatgtcggtagataagcccaaataagtcaatccaaacatacccttag 207  Q
    ||||| ||||||||||  ||||||||| |||||||| |||||||||||  |||||||    
T  7928264 tcacacaacttatgtcaatagataagctcaaataagccaatccaaacaggcccttag 7928208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 18525198 - 18525158
Alignment:
Q  160 ttatgtcggtagataagcccaaataagtcaatccaaacata 200  Q
    ||||||| |||||||||| ||||||||||||| ||||||||    
T  18525198 ttatgtctgtagataagctcaaataagtcaattcaaacata 18525158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 198
Target Start/End: Original strand, 38602431 - 38602478
Alignment:
Q  151 tcacaaaacttatgtcggtagataagcccaaataagtcaatccaaaca 198  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||    
T  38602431 tcacaaaacttatgtcagtagataagctcaaataagtcaatccaaaca 38602478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 124 - 198
Target Start/End: Complemental strand, 30251447 - 30251373
Alignment:
Q  124 tgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaaca 198  Q
    ||||||||||| |||||| |||  || |||| ||||||||||| |||||||||| |||||||| |||||||||||    
T  30251447 tgttttcgtaagttctcccaaacagtctcacgaaacttatgtcagtagataagctcaaataagccaatccaaaca 30251373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 207
Target Start/End: Complemental strand, 10758367 - 10758167
Alignment:
Q  8 tagcaaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagctacattagaaaaattacaaaaataagctgnnnnnnnctt 107  Q
    |||||||  ||||||||||||||||||| |||| || || ||||||||| | ||||||||||| |||||  || |||  |||| ||||||       |||    
T  10758367 tagcaaatcataaaataaagttaaattgtttttgtatatgctataagttgtctttataagctatattag-caacttatgaaaacaagctgaaaaaagctt 10758269  T
Q  108 ttgcgaattgtcat--gttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaacataccctt 205  Q
    |||  |||||||||  | ||||||| ||||||||   |||  || |||||||||||||||  | |||||||  ||||||||||||| ||||||| |||||    
T  10758268 ttgaaaattgtcataagctgttttcataaattctatcaaacagtctcacaaaacttatgttagcagataagttcaaataagtcaattcaaacatgccctt 10758169  T
Q  206 ag 207  Q
    ||    
T  10758168 ag 10758167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 43717927 - 43717855
Alignment:
Q  124 tgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaa 196  Q
    ||||||| ||| |||||| |||| || ||||||||||||||||  ||||||||| |||||||| |||||||||    
T  43717927 tgttttcataagttctcccaaatagtctcacaaaacttatgtcaatagataagctcaaataagccaatccaaa 43717855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 36963347 - 36963268
Alignment:
Q  124 tgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaacataccc 203  Q
    |||||| |||| |||||| |||  || |||||||||||||| | |||||| ||| |||||||| ||||||||||| ||||    
T  36963347 tgtttttgtaagttctcccaaacagtctcacaaaacttatgccagtagattagctcaaataagccaatccaaacagaccc 36963268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 16163311 - 16163261
Alignment:
Q  159 cttatgtcggtagataagcccaaataagtcaatccaaacatacccttagat 209  Q
    |||| ||| |||||||||||||||||||||||||||| ||  |||||||||    
T  16163311 cttaagtcagtagataagcccaaataagtcaatccaatcaggcccttagat 16163261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 1096594 - 1096642
Alignment:
Q  151 tcacaaaacttatgtcggtagataagcccaaataagtcaatccaaacat 199  Q
    ||||||||||||||||  || |||| | |||||||||||||||||||||    
T  1096594 tcacaaaacttatgtcactaaataaactcaaataagtcaatccaaacat 1096642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 5088243 - 5088279
Alignment:
Q  170 agataagcccaaataagtcaatccaaacataccctta 206  Q
    ||||||||  |||||||||||||||||||||||||||    
T  5088243 agataagctgaaataagtcaatccaaacataccctta 5088279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 206
Target Start/End: Complemental strand, 29818927 - 29818855
Alignment:
Q  134 aattctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaacataccctta 206  Q
    |||||||| |||  || ||||||||||||||   |||||||||| |||||| | |||||||||||| ||||||    
T  29818927 aattctccgaaacagtctcacaaaacttatgatagtagataagctcaaatatgccaatccaaacatgccctta 29818855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 21405120 - 21405067
Alignment:
Q  151 tcacaaaacttatgtcggtagataagcccaaataagtcaatccaaacataccct 204  Q
    |||||||||||||||| ||| |||||| |||||||||||||||||||| |||||    
T  21405120 tcacaaaacttatgtcagtatataagctcaaataagtcaatccaaacagaccct 21405067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 204
Target Start/End: Complemental strand, 10645380 - 10645298
Alignment:
Q  122 gttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaacataccct 204  Q
    ||||||||| ||| |||||| |||  || | ||||||||||||||  ||||||| | ||||| || |||||||||||||||||    
T  10645380 gttgttttcataagttctcccaaacagtcttacaaaacttatgtcattagataacctcaaattagccaatccaaacataccct 10645298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 18076155 - 18076217
Alignment:
Q  8 tagcaaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagcta 70  Q
    ||||||| || ||||||| ||||||||| |||||||  | ||||||||| |||||||||||||    
T  18076155 tagcaaaagagaaaataaggttaaattgtttttctaattgctataagttgtttttataagcta 18076217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 24626258 - 24626316
Alignment:
Q  12 aaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagcta 70  Q
    ||||||||||| |||||||||||| |||| || || ||||||||| |||| ||||||||    
T  24626258 aaaggataaaacaaagttaaattgtttttgtatattctataagttgttttcataagcta 24626316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 35069576 - 35069531
Alignment:
Q  153 acaaaacttatgtcggtagataagcccaaataagtcaatccaaaca 198  Q
    |||||||||||||| |||||||||| |||||||| |||| ||||||    
T  35069576 acaaaacttatgtcagtagataagctcaaataagccaatacaaaca 35069531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 4163261 - 4163305
Alignment:
Q  155 aaaacttatgtcggtagataagcccaaataagtcaatccaaacat 199  Q
    |||||||||| | |||||||||| |||||||| ||||||||||||    
T  4163261 aaaacttatgccagtagataagctcaaataagccaatccaaacat 4163305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 4224882 - 4224926
Alignment:
Q  155 aaaacttatgtcggtagataagcccaaataagtcaatccaaacat 199  Q
    |||||||||| | |||||||||| |||||||| ||||||||||||    
T  4224882 aaaacttatgccagtagataagctcaaataagccaatccaaacat 4224926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 200
Target Start/End: Complemental strand, 31776221 - 31776189
Alignment:
Q  168 gtagataagcccaaataagtcaatccaaacata 200  Q
    |||||||||| ||||||||||||||||||||||    
T  31776221 gtagataagctcaaataagtcaatccaaacata 31776189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 33027706 - 33027750
Alignment:
Q  161 tatgtcggtagataagcccaaataagtcaatccaaacataccctt 205  Q
    |||||| |||||||||| ||||||| ||||||||||||| |||||    
T  33027706 tatgtcagtagataagctcaaataaatcaatccaaacatgccctt 33027750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 33089582 - 33089658
Alignment:
Q  124 tgttttcgtaaattctccaaaatggtttcacaaa-acttatgtcggtagataagcccaaataagtcaatccaaacat 199  Q
    ||||||| ||| |||||  |||| || ||||||| || |||||| |||||||||| |||||||||||| ||||||||    
T  33089582 tgttttcataagttctctgaaatagtctcacaaatacatatgtcagtagataagctcaaataagtcaacccaaacat 33089658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 197
Target Start/End: Original strand, 584123 - 584196
Alignment:
Q  124 tgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaac 197  Q
    ||||||| ||||||||||||||  || ||||| ||||||||   |||||||||| |||||||||||||||||||    
T  584123 tgttttcataaattctccaaaacagtctcacagaacttatgctagtagataagctcaaataagtcaatccaaac 584196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 197
Target Start/End: Complemental strand, 24085331 - 24085258
Alignment:
Q  124 tgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaac 197  Q
    ||||||| ||| |||||||||   || |||||||||||||| |||||||||||| |||||||| ||||||||||    
T  24085331 tgttttcataagttctccaaaccagtctcacaaaacttatgccggtagataagctcaaataagccaatccaaac 24085258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 34610798 - 34610721
Alignment:
Q  125 gttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaacatacc 202  Q
    |||||| ||| |||||| |||| |||  |||||||||||||| |||||||||| |||||||||| || ||||||||||    
T  34610798 gttttcataagttctcccaaatagttgtacaaaacttatgtcagtagataagctcaaataagtccatacaaacatacc 34610721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 16073007 - 16072960
Alignment:
Q  151 tcacaaaacttatgtcggtagataagcccaaataagtcaatccaaaca 198  Q
    ||||||||||||||||  ||||||||| ||||||||||||||||||||    
T  16073007 tcacaaaacttatgtcattagataagctcaaataagtcaatccaaaca 16072960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 25447211 - 25447164
Alignment:
Q  151 tcacaaaacttatgtcggtagataagcccaaataagtcaatccaaaca 198  Q
    |||||||||||||||| |||||||| | ||||||||||||||||||||    
T  25447211 tcacaaaacttatgtcagtagataaactcaaataagtcaatccaaaca 25447164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 36631158 - 36631075
Alignment:
Q  12 aaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagctacattagaaaaattacaaaaataagc 95  Q
    |||||||||| ||||||||||||| |||| ||||| ||||||||| ||||||| ||||| ||| || || |||  |||||||||    
T  36631158 aaaggataaagtaaagttaaattgtttttgtacatgctataagttgtttttatgagctatattggagaacttatgaaaataagc 36631075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 198
Target Start/End: Complemental strand, 42799960 - 42799885
Alignment:
Q  124 tgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagat-aagcccaaataagtcaatccaaaca 198  Q
    ||||||| ||| |||||| |||  |||||||||||| |||||| |||||| |||| |||||||| |||||||||||    
T  42799960 tgttttcataagttctcccaaagagtttcacaaaacatatgtcagtagataaagctcaaataagccaatccaaaca 42799885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 5331252 - 5331318
Alignment:
Q  8 tagcaaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagctacatt 74  Q
    ||||||| || ||||||| ||||||||| | |||||  | ||||||||| |||||||||||||||||    
T  5331252 tagcaaaagagaaaataacgttaaattgttcttctaattgctataagttgtttttataagctacatt 5331318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 26990181 - 26990143
Alignment:
Q  161 tatgtcggtagataagcccaaataagtcaatccaaacat 199  Q
    |||||| |||||||||| |||||||||||||||||||||    
T  26990181 tatgtcagtagataagctcaaataagtcaatccaaacat 26990143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 29520590 - 29520524
Alignment:
Q  8 tagcaaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagctacatt 74  Q
    ||||||| || ||||||| ||||||||| | |||||  | ||||||||| |||||||||||||||||    
T  29520590 tagcaaaagagaaaataacgttaaattgttcttctaattgctataagttgtttttataagctacatt 29520524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 31615515 - 31615473
Alignment:
Q  162 atgtcggtagataagcccaaataagtcaatccaaacataccct 204  Q
    ||||| |||||||| | ||||||||||||||||||||||||||    
T  31615515 atgtccgtagataaactcaaataagtcaatccaaacataccct 31615473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 44014317 - 44014367
Alignment:
Q  159 cttatgtcggtagataagcccaaataagtcaatccaaacatacccttagat 209  Q
    |||| ||| |||||||||||||||||||||||||||| ||  |||||||||    
T  44014317 cttaagtcagtagataagcccaaataagtcaatccaatcaggcccttagat 44014367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 18405797 - 18405752
Alignment:
Q  151 tcacaaaacttatgtcggtagataagcccaaataagtcaatccaaa 196  Q
    |||||||||||||||| |||||||||| |||||||  |||||||||    
T  18405797 tcacaaaacttatgtcagtagataagctcaaataaaccaatccaaa 18405752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 26911699 - 26911740
Alignment:
Q  155 aaaacttatgtcggtagataagcccaaataagtcaatccaaa 196  Q
    |||||||||||| |||||||| | ||||||||||||||||||    
T  26911699 aaaacttatgtcagtagataaactcaaataagtcaatccaaa 26911740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 30443860 - 30443941
Alignment:
Q  16 gataaaataaagttaaattgcttttctacatcctataagttctttttataagctacattagaaaaattacaaaaataagctg 97  Q
    |||||||| |||||||||||||||| || || ||||||| | ||||||||| ||| ||| || || |||  |||||||||||    
T  30443860 gataaaatgaagttaaattgcttttgtatatgctataagctgtttttataaactatattggagaacttatgaaaataagctg 30443941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 32663754 - 32663795
Alignment:
Q  163 tgtcggtagataagcccaaataagtcaatccaaacataccct 204  Q
    ||||||||||||||| |||||||| ||||||||||| |||||    
T  32663754 tgtcggtagataagctcaaataagccaatccaaacagaccct 32663795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 33405155 - 33405114
Alignment:
Q  154 caaaacttatgtcggtagataagcccaaataagtcaatccaa 195  Q
    ||||||||||||| |||||||| | |||||||||||||||||    
T  33405155 caaaacttatgtcagtagataaactcaaataagtcaatccaa 33405114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 35959563 - 35959478
Alignment:
Q  12 aaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagctacattagaaaaattacaaaaataagctg 97  Q
    |||||||||||||||||||||||  |||| || || || |||||| ||| ||||||||| |||||| || ||   |||||||||||    
T  35959563 aaaggataaaataaagttaaattatttttgtatatgctgtaagttgtttctataagctatattagagaatttttgaaaataagctg 35959478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 197
Target Start/End: Complemental strand, 51929350 - 51929277
Alignment:
Q  124 tgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaac 197  Q
    |||||||  ||||||||  |||| || |||||||||||||| | ||| |||||  |||||||||||||||||||    
T  51929350 tgttttcagaaattctctcaaatagtatcacaaaacttatgccagtaaataaggtcaaataagtcaatccaaac 51929277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 20210885 - 20210841
Alignment:
Q  160 ttatgtcggtagataagcccaaataagtcaatccaaacataccct 204  Q
    ||||||| |||||||| | ||||||| ||||||||||||||||||    
T  20210885 ttatgtcagtagataacctcaaataaatcaatccaaacataccct 20210841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 14576760 - 14576695
Alignment:
Q  12 aaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagctacattaga 77  Q
    |||||||||||||||||||||||| |||| || || |||||| || ||||||||||||| ||||||    
T  14576760 aaaggataaaataaagttaaattgtttttgtatatgctataatttttttttataagctatattaga 14576695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 50644250 - 50644174
Alignment:
Q  122 gttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaaca 198  Q
    ||||||||| ||| |||||| |||  || ||||||||| |||||  |||||||||| ||||||||||||||||||||    
T  50644250 gttgttttcataagttctcccaaacagtctcacaaaacatatgttagtagataagctcaaataagtcaatccaaaca 50644174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 24334280 - 24334345
Alignment:
Q  132 taaattctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaac 197  Q
    |||||||||  |||| || |||||||||||||||| || ||||| | |||||||||||||||||||    
T  24334280 taaattctctcaaatagtctcacaaaacttatgtccgttgataaactcaaataagtcaatccaaac 24334345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 39976179 - 39976130
Alignment:
Q  148 gtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaac 197  Q
    ||||||||||||||||||| |||||||| | ||||||||||| |||||||    
T  39976179 gtttcacaaaacttatgtcagtagataatctcaaataagtcagtccaaac 39976130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 13809957 - 13810145
Alignment:
Q  8 tagcaaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagctacattagaaaaattacaaaaataagctgnnnnnnnctt 107  Q
    ||||||| |||||||||||||||||||| |||| || || |||||  || ||||||||| ||| |||||| || ||   ||||||||||        |||    
T  13809957 tagcaaaagataaaataaagttaaattgtttttgtatatgctatatattgtttttataaactatattagagaacttgtgaaaataagctaagaaaaactt 13810056  T
Q  108 ttgcgaattgtcat--gttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatcca 194  Q
    |||  |||||||||    ||| ||| ||| ||||| ||||  || |||||||||||| ||| |||||||||| |||||||| |||||||    
T  13810057 ttgaaaattgtcataaactgtattcataagttctctaaaagagtctcacaaaacttacgtcagtagataagcacaaataagccaatcca 13810145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 38116058 - 38116002
Alignment:
Q  136 ttctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatc 192  Q
    ||||||||||  || |||||||||||| ||| |||||||||| ||||||||||||||    
T  38116058 ttctccaaaaccgtctcacaaaacttacgtcagtagataagctcaaataagtcaatc 38116002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 198
Target Start/End: Original strand, 6292604 - 6292643
Alignment:
Q  159 cttatgtcggtagataagcccaaataagtcaatccaaaca 198  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  6292604 cttatgtcagtagataagctcaaataagtcaatccaaaca 6292643  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 33204360 - 33204313
Alignment:
Q  151 tcacaaaacttatgtcggtagataagcccaaataagtcaatccaaaca 198  Q
    |||||||||||||||| |||||||||| |||||||||| ||| |||||    
T  33204360 tcacaaaacttatgtcagtagataagctcaaataagtcgatctaaaca 33204313  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 198
Target Start/End: Original strand, 2295173 - 2295247
Alignment:
Q  124 tgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaaca 198  Q
    ||||||| ||| |||||| |||  || |||||||||||||| | |||||||||| |||||||| |||| ||||||    
T  2295173 tgttttcataagttctcccaaacagtctcacaaaacttatgccagtagataagctcaaataagccaattcaaaca 2295247  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 2295280 - 2295342
Alignment:
Q  136 ttctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaaca 198  Q
    |||||| |||| || ||| |||||||| ||| |||||||||| |||||||| |||||||||||    
T  2295280 ttctcccaaatagtctcagaaaacttaagtcagtagataagctcaaataagccaatccaaaca 2295342  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 14385774 - 14385712
Alignment:
Q  136 ttctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaaca 198  Q
    ||||||||||| || |||| ||||||||| | |||||||||| |||||||| |||||| ||||    
T  14385774 ttctccaaaatagtctcacgaaacttatgccagtagataagctcaaataagccaatccgaaca 14385712  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 28043589 - 28043659
Alignment:
Q  8 tagcaaaggataaaataaagttaaattgcttttc-tacatcctataagttctttttataagctacattaga 77  Q
    ||||||||| |||||||||||||| ||||||||| || || ||| |||||||||||| |||| | ||||||    
T  28043589 tagcaaagggtaaaataaagttaagttgcttttcgtatatgctaaaagttctttttaaaagccatattaga 28043659  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 33186225 - 33186286
Alignment:
Q  8 tagcaaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagct 69  Q
    ||||||||||||||| |||||||||||  | || || || ||||||||| ||||||||||||    
T  33186225 tagcaaaggataaaagaaagttaaatttttcttgtatatgctataagttgtttttataagct 33186286  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 36872806 - 36872879
Alignment:
Q  125 gttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaaca 198  Q
    |||||| ||||||||||||||  || || |||||||||||| | ||| |||||  ||||||| |||||||||||    
T  36872806 gttttcataaattctccaaaacagtctcgcaaaacttatgttgttagttaagcttaaataagccaatccaaaca 36872879  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 41505784 - 41505825
Alignment:
Q  157 aacttatgtcggtagataagcccaaataagtcaatccaaaca 198  Q
    |||||||||| |||||||||| |||||||| |||||||||||    
T  41505784 aacttatgtcagtagataagctcaaataagccaatccaaaca 41505825  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 3234010 - 3233934
Alignment:
Q  122 gttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagcccaaataagtcaatccaaaca 198  Q
    ||||||||| ||| ||||||  ||  || |||||||||||| | |  ||||||||| ||||||||||||||||||||    
T  3234010 gttgttttcataagttctccctaacagtctcacaaaacttacggcactagataagctcaaataagtcaatccaaaca 3233934  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 9572219 - 9572187
Alignment:
Q  8 tagcaaaggataaaataaagttaaattgctttt 40  Q
    ||||||| |||||||||||||||||||||||||    
T  9572219 tagcaaaagataaaataaagttaaattgctttt 9572187  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 26678863 - 26678927
Alignment:
Q  9 agcaaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagctacat 73  Q
    |||||| ||||||||||||||| |||| || | || || ||||||||| | ||||||||||||||    
T  26678863 agcaaaagataaaataaagttacattgtttatgtaaatgctataagttgtatttataagctacat 26678927  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 37517296 - 37517236
Alignment:
Q  17 ataaaataaagttaaattgcttttctacatcctataagttctttttataagctacattaga 77  Q
    ||||||||||||||||||| |||| || ||  |||||||| |||| |||||||| ||||||    
T  37517296 ataaaataaagttaaattgtttttgtatatattataagttattttaataagctatattaga 37517236  T

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