View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9760_12 (Length: 302)
Name: NF9760_12
Description: NF9760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9760_12 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 41548280 - 41548544
Alignment:
| Q |
1 |
agagtttctccatttgaagttgttgtctttccatttcaacattcttatgtaagtgttgaatctggtctttgagtgccaaatcccttctcaccaaaacacc |
100 |
Q |
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| T |
41548280 |
agagtttctccatttgaagttgttgtctttccatttcaacattcttatgtaagtgttgaatctggtctttgagtgccaaatcccttctcaccaaaacacc |
41548379 |
T |
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| Q |
101 |
ttcaactctttcataagtttccatctgtaaagatccaagcaatacttgaacaagatctgggatagtcattccttctaagtcaagagttgtcataggaaat |
200 |
Q |
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| T |
41548380 |
ttcaactctttcataagtttccatctgtaaagatccaagcaatacttgaacaagatctgggatagtcattccttctaagtcaagagttgtcataggaaat |
41548479 |
T |
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| Q |
201 |
gctccaacttcatcatcttcgactctatcaagaatcacgtggttggaggaaggtgacacaggttc |
265 |
Q |
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| T |
41548480 |
gctccaacttcatcatcttcgtctctatcaagaatcacgtggttggaggaaggtgacccaggttc |
41548544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 41509765 - 41509849
Alignment:
| Q |
25 |
gtctttccatttcaacattcttatgtaagtgttgaatctggtctttgagtgccaaatcccttctcaccaaaacaccttcaactct |
109 |
Q |
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| T |
41509765 |
gtctctccatatcaacattctgctgcaagcgttgagtttggtctctgagtccaacatctctactcaccaaaacaccttcaactct |
41509849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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