View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9760_7 (Length: 402)

Name: NF9760_7
Description: NF9760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9760_7
NF9760_7
[»] chr2 (6 HSPs)
chr2 (1-301)||(18056401-18056703)
chr2 (309-396)||(18695149-18695236)
chr2 (295-333)||(30400016-30400054)
chr2 (296-333)||(3309027-3309064)
chr2 (347-396)||(32190797-32190846)
chr2 (303-399)||(14955618-14955714)
[»] chr6 (4 HSPs)
chr6 (295-395)||(29255364-29255464)
chr6 (309-388)||(25398654-25398733)
chr6 (296-396)||(8102799-8102899)
chr6 (295-340)||(30894672-30894717)
[»] chr3 (8 HSPs)
chr3 (295-396)||(23799827-23799928)
chr3 (79-185)||(25631639-25631745)
chr3 (296-340)||(32701562-32701606)
chr3 (294-398)||(44647630-44647734)
chr3 (297-388)||(43564635-43564726)
chr3 (79-185)||(4172423-4172529)
chr3 (294-330)||(35864915-35864951)
chr3 (346-398)||(38142646-38142698)
[»] chr1 (4 HSPs)
chr1 (295-388)||(32873789-32873882)
chr1 (344-398)||(28053632-28053686)
chr1 (296-396)||(48750260-48750360)
chr1 (296-333)||(15431646-15431683)
[»] scaffold0017 (1 HSPs)
scaffold0017 (294-396)||(32664-32766)
[»] chr5 (4 HSPs)
chr5 (303-396)||(10722839-10722932)
chr5 (294-333)||(6216967-6217006)
chr5 (313-396)||(11192467-11192550)
chr5 (295-333)||(41630572-41630610)
[»] chr8 (4 HSPs)
chr8 (296-396)||(18890614-18890714)
chr8 (298-394)||(40211219-40211315)
chr8 (351-396)||(429006-429051)
chr8 (73-185)||(35580317-35580430)
[»] chr4 (2 HSPs)
chr4 (309-380)||(46991045-46991116)
chr4 (296-388)||(28514868-28514960)
[»] scaffold0884 (1 HSPs)
scaffold0884 (295-396)||(1890-1991)
[»] chr7 (1 HSPs)
chr7 (295-335)||(9977184-9977224)


Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 18056703 - 18056401
Alignment:
Q  1 gtctctactaggagtgcttcttaaaattccatctttttcactctcttttcaataagtcggtcctagttt-ctattccattttcttcattgagaggaaggt 99  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  18056703 gtctccactaggagtgcttcttaaaattccatctttttcactatcttttcaataagtcggtcctagtttactcttccattttcttcattgagaggaaggt 18056604  T
Q  100 tt-ggataaatttttgacacaaaatcatccatttccatctttatctccctattttagtctaaattagtaagttttacatagatctagnnnnnnncccttg 198  Q
    || |||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||       ||||||    
T  18056603 ttaggataaatttttgacacaaaatcacctatttccatctttatctccatattttagtctaaattagtaagttttacatagatctagtttttttcccttg 18056504  T
Q  199 tgatttcgttgtcaaagggcgatgttgccttttgcagcgttgtatgattttctatcttgttgtcgtgttcgtttgatttctagtgaaaaactctcatcaa 298  Q
    ||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||    
T  18056503 tgatttcgttgtcaaagggtgatgttgtgttttgcagcgttgtatgattttctatcttgttgcggtgttcgtttggtttctagtgaaaaactctcatcaa 18056404  T
Q  299 tta 301  Q
    |||    
T  18056403 tta 18056401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 396
Target Start/End: Original strand, 18695149 - 18695236
Alignment:
Q  309 aatcaatgatttgggcgttaacgttatagatctatagacataagtattccgatcactttgatcttatcatattatttgtaagcatttt 396  Q
    |||||||||||||| ||| ||||||  ||||||| || ||| | |||| ||| |||||| || |||||||||||||| || |||||||    
T  18695149 aatcaatgatttggtcgtcaacgttgcagatctagagccatgaatatttcgaccactttaattttatcatattatttataggcatttt 18695236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 333
Target Start/End: Complemental strand, 30400054 - 30400016
Alignment:
Q  295 tcaattacaaatttaatcaatgatttgggcgttaacgtt 333  Q
    ||||||||||||| |||||||||||||||||| ||||||    
T  30400054 tcaattacaaattcaatcaatgatttgggcgtcaacgtt 30400016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 333
Target Start/End: Original strand, 3309027 - 3309064
Alignment:
Q  296 caattacaaatttaatcaatgatttgggcgttaacgtt 333  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  3309027 caatcacaaattcaatcaatgatttgggcgttaacgtt 3309064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 396
Target Start/End: Original strand, 32190797 - 32190846
Alignment:
Q  347 cataagtattccgatcactttgatcttatcatattatttgtaagcatttt 396  Q
    |||||||||| |||| | ||| || |||||||||||||||||||||||||    
T  32190797 cataagtatttcgattattttcattttatcatattatttgtaagcatttt 32190846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 399
Target Start/End: Original strand, 14955618 - 14955714
Alignment:
Q  303 aaatttaatcaatgatttgggcgttaacgttatagatctatagacataagtattccgatcactttgatcttatcatattatttgtaagcattttatc 399  Q
    ||||| ||||||||||||| |||| ||||||  ||||| | | ||||  |||||| ||| | || ||| |||||||||||||||||  |||||||||    
T  14955618 aaattcaatcaatgatttgagcgtcaacgttgcagatccagaaacatgtgtattctgatgatttagattttatcatattatttgtagacattttatc 14955714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 295 - 395
Target Start/End: Complemental strand, 29255464 - 29255364
Alignment:
Q  295 tcaattacaaatttaatcaatgatttgggcgttaacgttatagatctatagacataagtattccgatcactttgatcttatcatattatttgtaagcatt 394  Q
    ||||||||||||| |||||||||||||||||| ||||||| |||||   | ||||  ||||| || | |||| ||| ||||||||||||||||| |||||    
T  29255464 tcaattacaaattcaatcaatgatttgggcgtcaacgttacagatccggaaacatgggtatttcggtgacttagattttatcatattatttgtaggcatt 29255365  T
Q  395 t 395  Q
    |    
T  29255364 t 29255364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 388
Target Start/End: Original strand, 25398654 - 25398733
Alignment:
Q  309 aatcaatgatttgggcgttaacgttatagatctatagacataagtattccgatcactttgatcttatcatattatttgta 388  Q
    |||||||||||||||||| ||||||   ||||   |||||||||| ||||||||||||| || |||||||||| ||||||    
T  25398654 aatcaatgatttgggcgtcaacgttgctgatccggagacataagttttccgatcactttaattttatcatattgtttgta 25398733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 8102799 - 8102899
Alignment:
Q  296 caattacaaatttaatcaatgatttgggcgttaacgttatagatctatagacataagtattccgatcactttgatcttatcatattatttgtaagcattt 395  Q
    |||| ||||||| | |||||||||||||||| ||||||  ||||| | | |||| | ||||| ||| | || ||| ||||||||||||||||| ||||||    
T  8102799 caatcacaaattcattcaatgatttgggcgtcaacgttgcagatccagaaacatgaatattctgatgatttagattttatcatattatttgtaggcattt 8102898  T
Q  396 t 396  Q
    |    
T  8102899 t 8102899  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 340
Target Start/End: Original strand, 30894672 - 30894717
Alignment:
Q  295 tcaattacaaatttaatcaatgatttgggcgttaacgttatagatc 340  Q
    ||||||||||||| || ||||||||||||||| ||||||| |||||    
T  30894672 tcaattacaaattcaaccaatgatttgggcgtcaacgttacagatc 30894717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 396
Target Start/End: Complemental strand, 23799928 - 23799827
Alignment:
Q  295 tcaattacaaatttaatcaatgatttgggcgttaacgttatagatctatagacataagtattccgatcactttgatcttatcatattatttgtaagcatt 394  Q
    ||||||||||||| |||||||||||| ||||| ||||||  |||||   | |||| |||||| | || |||| ||| ||||||||||||||||| |||||    
T  23799928 tcaattacaaattcaatcaatgatttcggcgtcaacgttgcagatccgaaaacatgagtatttcaatgacttagattttatcatattatttgtaggcatt 23799829  T
Q  395 tt 396  Q
    ||    
T  23799828 tt 23799827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 185
Target Start/End: Complemental strand, 25631745 - 25631639
Alignment:
Q  79 tttcttcattgagaggaaggtttggataaatttttgacacaaaatcatccatttccatctttatctccctattttagtctaaattagtaagttttacata 178  Q
    ||||||||||||| ||  | ||||| | ||||||||||  |||||||||| | ||||||||| |||| |||||| | ||||||| ||| | ||| |||||    
T  25631745 tttcttcattgaggggtggttttgggtcaatttttgacctaaaatcatccctctccatctttttctctctatttcaatctaaataagtgattttcacata 25631646  T
Q  179 gatctag 185  Q
    |||||||    
T  25631645 gatctag 25631639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 32701562 - 32701606
Alignment:
Q  296 caattacaaatttaatcaatgatttgggcgttaacgttatagatc 340  Q
    |||||||||||| |||||||||||||||||| |||||| ||||||    
T  32701562 caattacaaattcaatcaatgatttgggcgtcaacgttgtagatc 32701606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 398
Target Start/End: Original strand, 44647630 - 44647734
Alignment:
Q  294 atcaattacaaatttaatcaatgatttgggcgttaacgttatagatctatagacataagtattccgatcactttgatcttatcatattatttgtaagcat 393  Q
    |||||||| ||||| | ||||||| || ||||| ||| ||| |||||  ||  ||| |||| || ||||| |||||| ||||||||||||||||| ||||    
T  44647630 atcaattaaaaattcactcaatgacttaggcgtcaacattacagatccgtatgcatgagtactctgatcattttgattttatcatattatttgtatgcat 44647729  T
Q  394 tttat 398  Q
    |||||    
T  44647730 tttat 44647734  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 297 - 388
Target Start/End: Complemental strand, 43564726 - 43564635
Alignment:
Q  297 aattacaaatttaatcaatgatttgggcgttaacgttatagatctatagacataagtattccgatcactttgatcttatcatattatttgta 388  Q
    ||||||| ||| ||| ||||||||| |||| |||||| |||||| ||| |||  | ||||||||||| || ||| |||||||||||| ||||    
T  43564726 aattacacattaaataaatgatttgagcgtcaacgttgtagatcaataaacacgaatattccgatcaattagattttatcatattatgtgta 43564635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 185
Target Start/End: Original strand, 4172423 - 4172529
Alignment:
Q  79 tttcttcattgagaggaaggtttggataaatttttgacacaaaatcatccatttccatctttatctccctattttagtctaaattagtaagttttacata 178  Q
    ||||||||||||| ||  | ||||| | |||| || ||| |||||||||||| | ||||||| |||| |||||| | ||||||| ||| | ||| |||||    
T  4172423 tttcttcattgaggggtggttttgggtcaattcttaacataaaatcatccatcttcatctttttctctctatttcaatctaaataagtgattttcacata 4172522  T
Q  179 gatctag 185  Q
    |||||||    
T  4172523 gatctag 4172529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 35864951 - 35864915
Alignment:
Q  294 atcaattacaaatttaatcaatgatttgggcgttaac 330  Q
    |||||||||||||| |||||||||||||| |||||||    
T  35864951 atcaattacaaattcaatcaatgatttggacgttaac 35864915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 398
Target Start/End: Original strand, 38142646 - 38142698
Alignment:
Q  346 acataagtattccgatcactttgatcttatcatattatttgtaagcattttat 398  Q
    |||| ||||||| ||| | || ||||||||||||||||||||| |||||||||    
T  38142646 acattagtattctgatgatttagatcttatcatattatttgtaggcattttat 38142698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 388
Target Start/End: Complemental strand, 32873882 - 32873789
Alignment:
Q  295 tcaattacaaatttaatcaatgatttgggcgttaacgttatagatctatagacataagtattccgatcactttgatcttatcatattatttgta 388  Q
    ||||||||| ||||||||||||||||  |||| || |||  ||||| | | ||||  ||||| ||||||||||||| |||||||||||||||||    
T  32873882 tcaattacacatttaatcaatgatttaagcgtcaatgttgcagatccagaaacatgggtatttcgatcactttgattttatcatattatttgta 32873789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 344 - 398
Target Start/End: Complemental strand, 28053686 - 28053632
Alignment:
Q  344 agacataagtattccgatcactttgatcttatcatattatttgtaagcattttat 398  Q
    |||||| | ||||| |||||||||||| ||||||||||||||||| |||||||||    
T  28053686 agacatgattattctgatcactttgattttatcatattatttgtaggcattttat 28053632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 48750260 - 48750360
Alignment:
Q  296 caattacaaatttaatcaatgatttgggcgttaacgttatagatctatagacataagtattccgatcactttgatcttatcatattatttgtaagcattt 395  Q
    |||| |||||||||||||||||||||||||| ||||||  ||||| |||  |||  |||||| | | | || ||| | ||||||||||||||| ||||||    
T  48750260 caatcacaaatttaatcaatgatttgggcgtcaacgttgcagatccataagcatgggtattctggtgatttagatttcatcatattatttgtaggcattt 48750359  T
Q  396 t 396  Q
    |    
T  48750360 t 48750360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 333
Target Start/End: Complemental strand, 15431683 - 15431646
Alignment:
Q  296 caattacaaatttaatcaatgatttgggcgttaacgtt 333  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  15431683 caattacaaattcaatcaatgatttgggcgtcaacgtt 15431646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 396
Target Start/End: Complemental strand, 32766 - 32664
Alignment:
Q  294 atcaattacaaatttaatcaatgatttgggcgttaacgttatagatctatagacataagtattccgatcactttgatcttatcatattatttgtaagcat 393  Q
    |||||||||||||| || ||||||||||| ||| ||||||  ||||||  |  ||| |||||| || | |||| ||| ||||||||||||||||| ||||    
T  32766 atcaattacaaattcaagcaatgatttggacgtcaacgttgcagatctggaagcatgagtatttcggtgacttagattttatcatattatttgtaggcat 32667  T
Q  394 ttt 396  Q
    |||    
T  32666 ttt 32664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 396
Target Start/End: Original strand, 10722839 - 10722932
Alignment:
Q  303 aaatttaatcaatgatttgggcgttaacgttatagatctatagacataagtattccgatcactttgatcttatcatattatttgtaagcatttt 396  Q
    ||||| |||||||||||||||||| |||||| |||||| | |  |||  ||||| || | |||| ||| ||||||||||||||||| |||||||    
T  10722839 aaattcaatcaatgatttgggcgtcaacgttgtagatccaaaagcatgggtatttcggtgacttagattttatcatattatttgtaggcatttt 10722932  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 333
Target Start/End: Original strand, 6216967 - 6217006
Alignment:
Q  294 atcaattacaaatttaatcaatgatttgggcgttaacgtt 333  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  6216967 atcaattacaaattcaatcaatgatttgggcgtcaacgtt 6217006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 396
Target Start/End: Original strand, 11192467 - 11192550
Alignment:
Q  313 aatgatttgggcgttaacgttatagatctatagacataagtattccgatcactttgatcttatcatattatttgtaagcatttt 396  Q
    ||||||||||| || |||||| ||||||   | |||| |||||| |||||||||| |  ||||| |||||||||||||||||||    
T  11192467 aatgatttgggtgtcaacgttgtagatccggaaacatgagtatttcgatcactttaaatttatcgtattatttgtaagcatttt 11192550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 333
Target Start/End: Original strand, 41630572 - 41630610
Alignment:
Q  295 tcaattacaaatttaatcaatgatttgggcgttaacgtt 333  Q
    ||||||||||||| |||||||||||||||||| ||||||    
T  41630572 tcaattacaaattcaatcaatgatttgggcgtcaacgtt 41630610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 18890714 - 18890614
Alignment:
Q  296 caattacaaatttaatcaatgatttgggcgttaacgttatagatctatagacataagtattccgatcactttgatcttatcatattatttgtaagcattt 395  Q
    |||| ||||||| |||||||||||||||||| ||||||  ||||| | | ||||| |||||  | | | || ||| ||||||||||||||||| ||||||    
T  18890714 caatcacaaattcaatcaatgatttgggcgtcaacgttgcagatccagaaacataggtattatggtgatttagattttatcatattatttgtaggcattt 18890615  T
Q  396 t 396  Q
    |    
T  18890614 t 18890614  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 394
Target Start/End: Complemental strand, 40211315 - 40211219
Alignment:
Q  298 attacaaatttaatcaatgatttgggcgttaacgttatagatctatagacataagtattccgatcactttgatcttatcatattatttgtaagcatt 394  Q
    ||||||||||  | ||||||||||||||| |||||| ||||||   |  ||| |||||| || | |||| ||| |||||||||||||||||||||||    
T  40211315 attacaaattccaccaatgatttgggcgtcaacgttgtagatccggaagcatgagtatttcgttgacttggattttatcatattatttgtaagcatt 40211219  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 396
Target Start/End: Complemental strand, 429051 - 429006
Alignment:
Q  351 agtattccgatcactttgatcttatcatattatttgtaagcatttt 396  Q
    ||||||| | |||||||||| |||||||||||||| ||||||||||    
T  429051 agtattctggtcactttgattttatcatattatttataagcatttt 429006  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 185
Target Start/End: Original strand, 35580317 - 35580430
Alignment:
Q  73 ttccattttcttcattgagaggaaggttt-ggataaatttttgacacaaaatcatccatttccatctttatctccctattttagtctaaattagtaagtt 171  Q
    ||||| ||||||||||||||||  ||||| || | ||||||||||| |||||||  ||| | ||||||| |||| |||||| | | ||||| ||| | ||    
T  35580317 ttccaatttcttcattgagagggtggttttgggtcaatttttgacataaaatcactcatcttcatctttttctctctatttcaatttaaataagtgattt 35580416  T
Q  172 ttacatagatctag 185  Q
    | ||||||||||||    
T  35580417 tcacatagatctag 35580430  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 380
Target Start/End: Complemental strand, 46991116 - 46991045
Alignment:
Q  309 aatcaatgatttgggcgttaacgttatagatctatagacataagtattccgatcactttgatcttatcatat 380  Q
    |||||| |||||||| || ||||||  ||||||| ||||||| |||| ||||||||||| || |||||||||    
T  46991116 aatcaaagatttgggtgtcaacgttgcagatctagagacatatgtatcccgatcactttaattttatcatat 46991045  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 388
Target Start/End: Original strand, 28514868 - 28514960
Alignment:
Q  296 caattacaaatttaatcaatgatttgggcgttaacgttatagatctatagacataagtattccgatcactttgatcttatcatattatttgta 388  Q
    |||||||| ||||||| |||||||   ||||  ||||| |||||| | || |||   |||||||||||||||||| |||||||||||| ||||    
T  28514868 caattacatatttaattaatgattctagcgtctacgttgtagatccagagtcatgtttattccgatcactttgattttatcatattatctgta 28514960  T

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Target: scaffold0884 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0884
Description:

Target: scaffold0884; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 396
Target Start/End: Complemental strand, 1991 - 1890
Alignment:
Q  295 tcaattacaaatttaatcaatgatttgggcgttaacgttatagatctatagacataagtattccgatcactttgatcttatcatattatttgtaagcatt 394  Q
    ||||||||||||| || ||||| ||||||||| ||||||  |||||   | ||||||||||| || | | || | | ||||||||||||||||| |||||    
T  1991 tcaattacaaattcaaccaatggtttgggcgtcaacgttgcagatccgaaaacataagtatttcggtgatttaggttttatcatattatttgtaggcatt 1892  T
Q  395 tt 396  Q
    ||    
T  1891 tt 1890  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 335
Target Start/End: Complemental strand, 9977224 - 9977184
Alignment:
Q  295 tcaattacaaatttaatcaatgatttgggcgttaacgttat 335  Q
    ||||||||||||| || ||||||||||||||| ||||||||    
T  9977224 tcaattacaaattcaaacaatgatttgggcgtcaacgttat 9977184  T

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