View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9760_9 (Length: 364)
Name: NF9760_9
Description: NF9760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9760_9 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 30 - 310
Target Start/End: Original strand, 1446414 - 1446696
Alignment:
| Q |
30 |
tcctttgcataacatgtaccacaattcttatcttgattgcgcatgggcaacatcgcaccaactttgtgttaatctaactcgagagctagatccgacgtat |
129 |
Q |
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| T |
1446414 |
tcctttgcataacatgtaccacaattcttatcttgattgcgcatgggcaacatcgcaccaactttgtgttaatctaactcgagagctagatccgacgtat |
1446513 |
T |
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| Q |
130 |
cttgttctacatat--atgttctatgcacaagtttttcctaatctgcacaaagttgagttctctattgcgaaaaagatatgtcttacatcgtgataagag |
227 |
Q |
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| T |
1446514 |
cttgctctacatatgtatgttctttgcacaagtttttcctaatctgcacaaagttgagttctctattgcaaaaaagatatgtcttacatcgtgataagag |
1446613 |
T |
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| Q |
228 |
agataatatctccgataagacttgaaatgtttcaagaccctgttagtaaatcttttgaattattagtgagtcgctccacctgt |
310 |
Q |
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| T |
1446614 |
agataatatctccgataagacttgaaatgtttcaagaccctgttagtaaatcttttgaattatcagtgagtcgctccacctgt |
1446696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 13911082 - 13911024
Alignment:
| Q |
305 |
acctgtgtcaaattggtgattccaagaacgaagcaaatcgaatcgagaatgttcgattt |
363 |
Q |
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| T |
13911082 |
acctgtgtcaaattggtgattccaagaacgaagcaaatcgaatcgagaatattcgattt |
13911024 |
T |
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