View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9760_low_1 (Length: 535)
Name: NF9760_low_1
Description: NF9760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9760_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Original strand, 11023631 - 11024149
Alignment:
| Q |
1 |
tcttacacttcccattaaaccatcaccaggtttcgccagactcacggaatcacttatagaagctgaaaatgattctcatggcgtgatcgttaatagcttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11023631 |
tcttacacttcccattaaaccatcaccaggtttcgctagactcacagaatcacttatagaagctgaaaatgattctcatggcgtgatcgttaatagcttc |
11023730 |
T |
|
| Q |
101 |
gctgaacttgacgaaggttacacagaatattatgagaatctcaccggacggaaggtttggcatgtgggaccaacttctctaatggtggaaattcccaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11023731 |
gctgaacttgacgaaggttacacagaatattatgagaatctcaccggacggaaggtttggcatgtgggaccaacttctctaatggtggaaattcccaaaa |
11023830 |
T |
|
| Q |
201 |
agaagaaagtagtaagtactgaaaatgattcctctatcacgaaacacgagagtctcacttggctcgatactaaggaaccaagttcggttctttacattag |
300 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11023831 |
agaagaaagtagtgagtactgaaaatgattcctctatcacgaaacaccagagtctcacttggctcgatactaaggaaccaagttcggttctttacattag |
11023930 |
T |
|
| Q |
301 |
cttcgggagtttatgtcgtttatcaaacgaacaacttaaggagatggctaatggaatcgaagcgtcaaagcatcaattcctttgggtggttcatggaaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11023931 |
cttcgggagtttatgtcgtttatcaaacgaacaacttaaggagatggctaatggaatcgaagcgtcaaagcatcaattcctttgggtggttcatggaaaa |
11024030 |
T |
|
| Q |
401 |
gaaggtgaagatgaagataattggttaccaaaaggttttaccgagaggatgaaggaagaaaagaaaggaatgttgattaaaggatgggttccacaagcgt |
500 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11024031 |
gaaggagaagatgaagataattggttaccaaaaggttttgtagagaggatgaaggaagaaaagaaaggaatgttgattaaaggatgggttccacaagcgt |
11024130 |
T |
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| Q |
501 |
taatattggatcatccatc |
519 |
Q |
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||||||||||||||||||| |
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| T |
11024131 |
taatattggatcatccatc |
11024149 |
T |
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