View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9760_low_2 (Length: 375)

Name: NF9760_low_2
Description: NF9760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9760_low_2
NF9760_low_2
[»] chr7 (26 HSPs)
chr7 (19-367)||(33266246-33266594)
chr7 (178-252)||(19302482-19302556)
chr7 (180-248)||(9210902-9210970)
chr7 (171-254)||(11619070-11619153)
chr7 (178-254)||(4970711-4970787)
chr7 (178-225)||(44822062-44822109)
chr7 (299-360)||(119877-119938)
chr7 (170-219)||(37064379-37064428)
chr7 (178-254)||(18962502-18962578)
chr7 (170-206)||(40371565-40371601)
chr7 (178-217)||(1418531-1418570)
chr7 (170-225)||(11782954-11783009)
chr7 (178-225)||(22283565-22283612)
chr7 (180-223)||(33673183-33673226)
chr7 (178-225)||(34036021-34036068)
chr7 (177-216)||(44917444-44917483)
chr7 (304-367)||(45806524-45806587)
chr7 (173-216)||(47046022-47046065)
chr7 (170-208)||(529483-529521)
chr7 (172-206)||(28340990-28341024)
chr7 (178-208)||(40598404-40598434)
chr7 (178-252)||(46407310-46407384)
chr7 (180-225)||(18765388-18765433)
chr7 (169-209)||(25596152-25596192)
chr7 (182-254)||(33678855-33678927)
chr7 (172-208)||(34083521-34083557)
[»] chr4 (43 HSPs)
chr4 (170-228)||(27043741-27043799)
chr4 (179-250)||(15173223-15173294)
chr4 (178-240)||(17822784-17822846)
chr4 (178-224)||(42403942-42403988)
chr4 (178-225)||(41336864-41336911)
chr4 (178-225)||(54426147-54426194)
chr4 (180-253)||(22538998-22539071)
chr4 (180-225)||(52315118-52315163)
chr4 (178-227)||(55437178-55437227)
chr4 (172-224)||(35571544-35571596)
chr4 (184-228)||(49003800-49003844)
chr4 (171-206)||(679837-679872)
chr4 (170-213)||(1133044-1133087)
chr4 (170-217)||(3639079-3639126)
chr4 (178-225)||(8705045-8705092)
chr4 (178-209)||(17975256-17975287)
chr4 (178-225)||(21731575-21731622)
chr4 (172-207)||(21953395-21953430)
chr4 (178-217)||(25717705-25717744)
chr4 (178-217)||(29126182-29126221)
chr4 (186-225)||(29657488-29657527)
chr4 (178-213)||(32769495-32769530)
chr4 (178-225)||(39691068-39691115)
chr4 (178-225)||(44797984-44798031)
chr4 (178-225)||(49940086-49940133)
chr4 (178-216)||(825408-825446)
chr4 (173-243)||(2244137-2244207)
chr4 (175-208)||(3891712-3891745)
chr4 (172-205)||(19039566-19039599)
chr4 (178-219)||(25571369-25571410)
chr4 (178-223)||(29388720-29388765)
chr4 (178-223)||(53294033-53294078)
chr4 (172-205)||(53315450-53315483)
chr4 (172-217)||(54575516-54575561)
chr4 (181-225)||(1408061-1408105)
chr4 (172-208)||(7367967-7368003)
chr4 (299-367)||(7601719-7601787)
chr4 (173-225)||(13126490-13126542)
chr4 (169-225)||(18815127-18815183)
chr4 (169-225)||(24169367-24169423)
chr4 (178-206)||(24193655-24193683)
chr4 (172-208)||(25309313-25309349)
chr4 (178-250)||(55414332-55414404)
[»] chr5 (39 HSPs)
chr5 (178-223)||(39594913-39594958)
chr5 (178-317)||(12857257-12857398)
chr5 (168-217)||(14331478-14331527)
chr5 (172-225)||(34736440-34736493)
chr5 (173-252)||(32941546-32941626)
chr5 (168-228)||(35299866-35299926)
chr5 (169-225)||(41419423-41419479)
chr5 (169-225)||(41534542-41534598)
chr5 (169-208)||(14932417-14932456)
chr5 (179-225)||(9107194-9107240)
chr5 (180-225)||(7674751-7674796)
chr5 (168-225)||(7705907-7705964)
chr5 (170-207)||(9174938-9174975)
chr5 (181-225)||(11064770-11064814)
chr5 (178-360)||(16937802-16937986)
chr5 (181-221)||(22209746-22209786)
chr5 (178-217)||(499650-499689)
chr5 (178-225)||(3932595-3932642)
chr5 (178-225)||(10640057-10640104)
chr5 (186-225)||(12425677-12425716)
chr5 (178-216)||(17369316-17369354)
chr5 (178-220)||(32010054-32010096)
chr5 (178-216)||(36796626-36796664)
chr5 (170-208)||(42646791-42646829)
chr5 (186-223)||(4625835-4625872)
chr5 (180-225)||(6096651-6096696)
chr5 (182-223)||(9202671-9202712)
chr5 (178-223)||(32942700-32942745)
chr5 (177-250)||(42582606-42582679)
chr5 (170-206)||(8651263-8651299)
chr5 (177-225)||(11700266-11700314)
chr5 (178-254)||(12857624-12857700)
chr5 (176-208)||(14257569-14257601)
chr5 (180-216)||(14706205-14706241)
chr5 (190-250)||(15015922-15015982)
chr5 (178-218)||(32197844-32197884)
chr5 (179-207)||(35963351-35963379)
chr5 (178-254)||(41535456-41535532)
chr5 (178-214)||(42647005-42647041)
[»] chr2 (36 HSPs)
chr2 (178-254)||(27317454-27317530)
chr2 (178-254)||(4607000-4607076)
chr2 (178-254)||(18179024-18179100)
chr2 (178-250)||(30331830-30331902)
chr2 (178-228)||(15305775-15305825)
chr2 (172-228)||(2416414-2416470)
chr2 (169-225)||(3312181-3312237)
chr2 (180-252)||(42419870-42419942)
chr2 (178-221)||(31744406-31744449)
chr2 (170-225)||(39073613-39073668)
chr2 (176-217)||(22878210-22878251)
chr2 (180-217)||(28803451-28803488)
chr2 (172-208)||(6772446-6772482)
chr2 (169-225)||(7928208-7928264)
chr2 (176-216)||(18525158-18525198)
chr2 (172-252)||(23974406-23974486)
chr2 (178-209)||(3078527-3078558)
chr2 (178-225)||(10619139-10619186)
chr2 (178-217)||(15370242-15370281)
chr2 (177-252)||(20952432-20952507)
chr2 (178-225)||(26202132-26202179)
chr2 (181-228)||(31561664-31561711)
chr2 (178-245)||(44119866-44119933)
chr2 (184-218)||(26548564-26548598)
chr2 (170-208)||(35329729-35329767)
chr2 (178-216)||(40837356-40837394)
chr2 (306-360)||(41407042-41407096)
chr2 (178-207)||(750856-750885)
chr2 (172-217)||(4350802-4350847)
chr2 (178-254)||(26143561-26143635)
chr2 (184-217)||(35809979-35810012)
chr2 (179-216)||(40059381-40059418)
chr2 (179-216)||(40085281-40085318)
chr2 (180-225)||(44590128-44590173)
chr2 (172-216)||(2964722-2964766)
chr2 (176-208)||(13866999-13867031)
[»] chr8 (26 HSPs)
chr8 (178-225)||(38602431-38602478)
chr8 (178-252)||(30251373-30251447)
chr8 (169-359)||(10758167-10758358)
chr8 (180-252)||(43717855-43717927)
chr8 (173-252)||(36963268-36963347)
chr8 (177-225)||(1096594-1096642)
chr8 (170-206)||(5088243-5088279)
chr8 (170-242)||(29818855-29818927)
chr8 (166-217)||(2487915-2487966)
chr8 (178-225)||(9130238-9130285)
chr8 (178-225)||(32213223-32213270)
chr8 (178-225)||(35534532-35534579)
chr8 (180-254)||(39551130-39551205)
chr8 (178-216)||(2606162-2606200)
chr8 (179-217)||(4560614-4560652)
chr8 (178-252)||(15180617-15180690)
chr8 (170-216)||(29417522-29417568)
chr8 (178-220)||(35374371-35374413)
chr8 (179-225)||(40859703-40859749)
chr8 (178-224)||(42893409-42893455)
chr8 (180-225)||(12496993-12497038)
chr8 (187-216)||(23996557-23996586)
chr8 (169-225)||(1057987-1058043)
chr8 (168-208)||(10727465-10727505)
chr8 (169-217)||(35928640-35928688)
chr8 (178-254)||(41589661-41589737)
[»] chr6 (26 HSPs)
chr6 (172-225)||(21405067-21405120)
chr6 (172-254)||(10645298-10645380)
chr6 (178-223)||(35069531-35069576)
chr6 (177-221)||(4163261-4163305)
chr6 (177-221)||(4224882-4224926)
chr6 (176-208)||(31776189-31776221)
chr6 (171-215)||(33027706-33027750)
chr6 (177-252)||(33089582-33089658)
chr6 (191-254)||(2455334-2455397)
chr6 (178-217)||(2457053-2457092)
chr6 (170-225)||(6536716-6536771)
chr6 (173-224)||(18612411-18612462)
chr6 (178-224)||(835180-835226)
chr6 (178-208)||(9202904-9202934)
chr6 (306-364)||(24626258-24626316)
chr6 (178-240)||(24982794-24982856)
chr6 (170-204)||(29249518-29249552)
chr6 (178-224)||(34404645-34404691)
chr6 (306-367)||(18076156-18076217)
chr6 (176-225)||(32729060-32729109)
chr6 (180-225)||(35071598-35071643)
chr6 (185-217)||(2455922-2455954)
chr6 (171-207)||(10452333-10452369)
chr6 (180-208)||(12111088-12111116)
chr6 (178-210)||(19800376-19800408)
chr6 (178-218)||(30536884-30536924)
[»] chr3 (39 HSPs)
chr3 (179-252)||(584123-584196)
chr3 (179-252)||(24085258-24085331)
chr3 (174-251)||(34610721-34610798)
chr3 (178-225)||(16072960-16073007)
chr3 (178-225)||(25447164-25447211)
chr3 (281-364)||(36631075-36631158)
chr3 (178-252)||(42799885-42799960)
chr3 (177-215)||(26990143-26990181)
chr3 (172-214)||(31615473-31615515)
chr3 (180-225)||(18405752-18405797)
chr3 (180-221)||(26911699-26911740)
chr3 (172-213)||(32663754-32663795)
chr3 (181-222)||(33405114-33405155)
chr3 (179-252)||(51929277-51929350)
chr3 (172-216)||(20210841-20210885)
chr3 (174-217)||(2080998-2081041)
chr3 (178-225)||(20170633-20170680)
chr3 (178-221)||(24684741-24684784)
chr3 (174-221)||(32582845-32582892)
chr3 (177-208)||(46407863-46407894)
chr3 (178-225)||(46478771-46478818)
chr3 (172-206)||(2100092-2100126)
chr3 (178-228)||(9832674-9832724)
chr3 (175-217)||(21872211-21872253)
chr3 (180-218)||(46407617-46407655)
chr3 (302-367)||(5331253-5331318)
chr3 (190-223)||(5448550-5448583)
chr3 (302-367)||(29520524-29520589)
chr3 (279-360)||(30443860-30443941)
chr3 (279-364)||(35959478-35959563)
chr3 (172-225)||(39980833-39980886)
chr3 (178-250)||(47132397-47132467)
chr3 (178-207)||(51929863-51929892)
chr3 (179-207)||(20669471-20669499)
chr3 (180-224)||(21367772-21367816)
chr3 (178-222)||(34235012-34235056)
chr3 (178-254)||(42747701-42747777)
chr3 (171-215)||(45432865-45432909)
chr3 (190-254)||(46778122-46778186)
[»] chr1 (42 HSPs)
chr1 (178-254)||(50644174-50644250)
chr1 (299-364)||(14576695-14576760)
chr1 (179-244)||(24334280-24334345)
chr1 (179-228)||(39976130-39976179)
chr1 (184-240)||(38116002-38116058)
chr1 (178-217)||(6292604-6292643)
chr1 (178-225)||(33204313-33204360)
chr1 (178-252)||(2295173-2295247)
chr1 (178-240)||(2295280-2295342)
chr1 (178-240)||(14385712-14385774)
chr1 (180-225)||(1432619-1432664)
chr1 (178-251)||(36872806-36872879)
chr1 (178-219)||(41505784-41505825)
chr1 (178-254)||(3233934-3234010)
chr1 (177-216)||(7217992-7218031)
chr1 (182-367)||(13809958-13810145)
chr1 (178-225)||(27146174-27146221)
chr1 (177-252)||(37617383-37617458)
chr1 (178-208)||(3319865-3319895)
chr1 (172-214)||(5151990-5152032)
chr1 (191-225)||(7028406-7028440)
chr1 (178-224)||(7069384-7069430)
chr1 (181-223)||(15784423-15784465)
chr1 (177-206)||(5886910-5886939)
chr1 (195-240)||(7107448-7107493)
chr1 (299-367)||(28043590-28043659)
chr1 (180-217)||(34303178-34303215)
chr1 (170-207)||(34952324-34952361)
chr1 (180-217)||(51929383-51929420)
chr1 (178-250)||(473242-473314)
chr1 (174-206)||(601163-601195)
chr1 (170-202)||(3887543-3887575)
chr1 (180-216)||(5157185-5157221)
chr1 (185-225)||(6102257-6102297)
chr1 (181-217)||(10199330-10199366)
chr1 (178-214)||(24460320-24460356)
chr1 (303-367)||(26678863-26678927)
chr1 (172-208)||(26866434-26866470)
chr1 (180-216)||(29793619-29793655)
chr1 (307-367)||(33186226-33186286)
chr1 (299-359)||(37517236-37517296)
chr1 (169-205)||(48748505-48748541)
[»] scaffold0024 (2 HSPs)
scaffold0024 (174-208)||(21213-21247)
scaffold0024 (170-207)||(58995-59032)
[»] scaffold0459 (1 HSPs)
scaffold0459 (171-204)||(6671-6704)
[»] scaffold0366 (1 HSPs)
scaffold0366 (171-204)||(6669-6702)


Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 367
Target Start/End: Original strand, 33266246 - 33266594
Alignment:
Q  19 cgagttggagtcacgtttatgagcatcctcttcaccaatcaaatgactatcaaactcatggttaatttgggcaagttggagtcacatttattcgtattga 118  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33266246 cgagttggagtcacgtttatgagcatcctcttcaccgatcaaatgactatcaaactcatggttaatttgggcaagttggagtcacatttattcgtattga 33266345  T
Q  119 acttgaagaagttgaaaaaattacaggtataatgaccatggagtttcaatctaagggtatgtttggattgacttatttgagcttatctaccgacataagt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33266346 acttgaagaagttgaaaaaattacaggtataatgaccatggagtttcaatctaagggtatgtttggattgacttatttgagcttatctaccgacataagt 33266445  T
Q  219 tttgtgaaaccattttggagaatttacgaaaacaacatgacaattcgcaaaagnnnnnnncagcttatttttgtaatttttctaatgtagcttataaaaa 318  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  33266446 tttgtgaaactatttgggagaatttacgaaaacaacatgacaattcgcaaaagtttttttcagcttatttttgtaatttttctaatgtagcttataaaaa 33266545  T
Q  319 gaacttataggatgtagaaaagcaatttaactttattttatcctttgct 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33266546 gaacttataggatgtagaaaagcaatttaactttattttatcctttgct 33266594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 19302482 - 19302556
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 252  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||| |  |||| |||||||||| |||||||    
T  19302482 tgtttgaattgacttatttgagcttatctactgacataagttttgtgagaatatttgggagaatttatgaaaaca 19302556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 9210970 - 9210902
Alignment:
Q  180 tttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaa 248  Q
    ||||||||||||||||||||||||||||| || ||||||||| ||| ||  ||| ||||||||||||||    
T  9210970 tttggattgacttatttgagcttatctactgatataagttttctgagactgtttgggagaatttacgaa 9210902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 11619070 - 11619153
Alignment:
Q  171 aagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 254  Q
    |||||| ||||||||||| ||||||||||||||||||| |||||||| ||  ||||||   || |||||||||| |||||||||    
T  11619070 aagggtttgtttggattggcttatttgagcttatctactgacataagcttcatgaaacagattgggagaatttatgaaaacaac 11619153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 4970711 - 4970787
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 254  Q
    |||||||||||||||||||||||||||||   ||||||||| |||||| ||  ||| |||||| ||| |||||||||    
T  4970711 tgtttggattgacttatttgagcttatctcgtgacataagtcttgtgagactgtttgggagaacttatgaaaacaac 4970787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 44822109 - 44822062
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    |||||||||||||||||||||| |||||| | ||||||||||||||||    
T  44822109 tgtttggattgacttatttgagtttatctgctgacataagttttgtga 44822062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 360
Target Start/End: Complemental strand, 119938 - 119877
Alignment:
Q  299 tctaatgtagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatc 360  Q
    ||||||||| |||||||||| ||||||||| || || | || ||||||||||||||||||||    
T  119938 tctaatgtaacttataaaaacaacttatagcatttacacaaacaatttaactttattttatc 119877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 37064379 - 37064428
Alignment:
Q  170 taagggtatgtttggattgacttatttgagcttatctaccgacataagtt 219  Q
    ||||||| ||||||||||||||||||||| ||||||||| || |||||||    
T  37064379 taagggtctgtttggattgacttatttgatcttatctactgatataagtt 37064428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 18962502 - 18962578
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 254  Q
    |||||||||||| ||||| || ||||||||| |||||||||||||| | ||  |||||||||| ||| |||| ||||    
T  18962502 tgtttggattgagttattcgatcttatctactgacataagttttgttagactgttttggagaacttatgaaaccaac 18962578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 40371565 - 40371601
Alignment:
Q  170 taagggtatgtttggattgacttatttgagcttatct 206  Q
    |||||| ||||||||||||||||||||||||||||||    
T  40371565 taagggcatgtttggattgacttatttgagcttatct 40371601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 217
Target Start/End: Complemental strand, 1418570 - 1418531
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataag 217  Q
    ||||||||||||||||||||||||||||||| | ||||||    
T  1418570 tgtttggattgacttatttgagcttatctactggcataag 1418531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 11782954 - 11783009
Alignment:
Q  170 taagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||||| |||||||||||||||||||||| |||||||| ||  ||||||| ||||    
T  11782954 taagggtttgtttggattgacttatttgagattatctactgatgtaagtttagtga 11783009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 22283565 - 22283612
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||||||||||||||||||| ||||||||| | ||||| ||||||||    
T  22283565 tgtttggattgacttatttgaacttatctactgtcataaattttgtga 22283612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 33673226 - 33673183
Alignment:
Q  180 tttggattgacttatttgagcttatctaccgacataagttttgt 223  Q
    |||||||||||| |||||||||||||||| |||||||| |||||    
T  33673226 tttggattgactcatttgagcttatctactgacataagctttgt 33673183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 34036068 - 34036021
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    |||||| |||||||||||||||||||||||| |||||| || ||||||    
T  34036068 tgtttgaattgacttatttgagcttatctactgacatatgtattgtga 34036021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 44917444 - 44917483
Alignment:
Q  177 atgtttggattgacttatttgagcttatctaccgacataa 216  Q
    ||||||||||||||||||||||| |||||| |||||||||    
T  44917444 atgtttggattgacttatttgagtttatctcccgacataa 44917483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 367
Target Start/End: Original strand, 45806524 - 45806587
Alignment:
Q  304 tgtagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatcctttgct 367  Q
    ||||||||||||||| ||||||||| |  ||||||| ||||||||| ||||||| || ||||||    
T  45806524 tgtagcttataaaaacaacttatagcaattagaaaaacaatttaacgttattttctcttttgct 45806587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 216
Target Start/End: Original strand, 47046022 - 47046065
Alignment:
Q  173 gggtatgtttggattgacttatttgagcttatctaccgacataa 216  Q
    |||| |||||||||||||||||||| |||||||||| |||||||    
T  47046022 gggtctgtttggattgacttatttgtgcttatctactgacataa 47046065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 208
Target Start/End: Complemental strand, 529521 - 529483
Alignment:
Q  170 taagggtatgtttggattgacttatttgagcttatctac 208  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  529521 taagggtctgattggattgacttatttgagcttatctac 529483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 28340990 - 28341024
Alignment:
Q  172 agggtatgtttggattgacttatttgagcttatct 206  Q
    ||||| |||||||||||||||||||||||||||||    
T  28340990 agggtctgtttggattgacttatttgagcttatct 28341024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 208
Target Start/End: Original strand, 40598404 - 40598434
Alignment:
Q  178 tgtttggattgacttatttgagcttatctac 208  Q
    |||||||||||||||||||||||||||||||    
T  40598404 tgtttggattgacttatttgagcttatctac 40598434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 252
Target Start/End: Complemental strand, 46407384 - 46407310
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 252  Q
    |||| |||||| |||| |||||||||||||| | ||||||||||| ||||| | || |||||| ||| |||||||    
T  46407384 tgttaggattggcttaattgagcttatctactgccataagttttgggaaactacttgggagaacttatgaaaaca 46407310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 18765433 - 18765388
Alignment:
Q  180 tttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    |||||||||  |||||||||||||||||  ||||||||||||||||    
T  18765433 tttggattgctttatttgagcttatctattgacataagttttgtga 18765388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 25596192 - 25596152
Alignment:
Q  169 ctaagggtatgtttggattgacttatttgagcttatctacc 209  Q
    |||||||  |||||||| |||||||||||||||||||||||    
T  25596192 ctaagggcctgtttggactgacttatttgagcttatctacc 25596152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 33678927 - 33678855
Alignment:
Q  182 tggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 254  Q
    ||||||| ||||||| | |||||||||   |||||||||||||| || |||| |||||| ||| |||||||||    
T  33678927 tggattggcttatttaaacttatctacttgcataagttttgtgagacaatttgggagaacttatgaaaacaac 33678855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 34083521 - 34083557
Alignment:
Q  172 agggtatgtttggattgacttatttgagcttatctac 208  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  34083521 agggcatgtttggattgacttatttgagctcatctac 34083557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 27043741 - 27043799
Alignment:
Q  170 taagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtgaaac 228  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27043741 taagggtctgtttggattgacttatttgagcttatctactgacataagttttgtgaaac 27043799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 250
Target Start/End: Original strand, 15173223 - 15173294
Alignment:
Q  179 gtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaa 250  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||| ||  ||| ||||| |||| |||||    
T  15173223 gtttggattgacttatttgaacttatctactgacataagttttgtgagactgtttgggagactttatgaaaa 15173294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 17822784 - 17822846
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaa 240  Q
    |||||||||| |||||||||||||||||||| |||||||||| ||||| || |||| ||||||    
T  17822784 tgtttggattaacttatttgagcttatctactgacataagttctgtgagactatttaggagaa 17822846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 42403942 - 42403988
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtg 224  Q
    |||||||||||||||||||||||||||| || |||||||||||||||    
T  42403942 tgtttggattgacttatttgagcttatcaactgacataagttttgtg 42403988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 41336911 - 41336864
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    |||||||||||||||||||||| ||||||||  |||||||||||||||    
T  41336911 tgtttggattgacttatttgagtttatctactcacataagttttgtga 41336864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 54426194 - 54426147
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||||||||| ||||||||||||||||||| | ||||||||||||||    
T  54426194 tgtttggattggcttatttgagcttatctactggcataagttttgtga 54426147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 253
Target Start/End: Original strand, 22538998 - 22539071
Alignment:
Q  180 tttggattgactta-tttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaa 253  Q
    |||||||||||||| ||||||||||||||| | |||||| ||||||| || |||| |||||| ||||||||||||    
T  22538998 tttggattgacttactttgagcttatctactggcataag-tttgtgagacaatttgggagaacttacgaaaacaa 22539071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 52315118 - 52315163
Alignment:
Q  180 tttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    |||||||||||||||||||| |||||||| ||| ||||||||||||    
T  52315118 tttggattgacttatttgagtttatctactgacgtaagttttgtga 52315163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 55437227 - 55437178
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaa 227  Q
    ||||||||||| |||||||||| |||||||| | ||||||||||||||||    
T  55437227 tgtttggattggcttatttgagtttatctactgccataagttttgtgaaa 55437178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 35571544 - 35571596
Alignment:
Q  172 agggtatgtttggattgacttatttgagcttatctaccgacataagttttgtg 224  Q
    ||||| ||||||||||| |||||||||||||||||||   |||||||||||||    
T  35571544 agggtctgtttggattggcttatttgagcttatctactagcataagttttgtg 35571596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 49003800 - 49003844
Alignment:
Q  184 gattgacttatttgagcttatctaccgacataagttttgtgaaac 228  Q
    |||||||||||||||||||||| || ||| |||||||||||||||    
T  49003800 gattgacttatttgagcttatccactgacgtaagttttgtgaaac 49003844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 206
Target Start/End: Complemental strand, 679872 - 679837
Alignment:
Q  171 aagggtatgtttggattgacttatttgagcttatct 206  Q
    ||||||||||||||||||||| ||||||||||||||    
T  679872 aagggtatgtttggattgactaatttgagcttatct 679837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 1133087 - 1133044
Alignment:
Q  170 taagggtatgtttggattgacttatttgagcttatctaccgaca 213  Q
    ||||||| |||||| |||||||||||||||||||||||| ||||    
T  1133087 taagggtgtgtttgaattgacttatttgagcttatctactgaca 1133044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 3639079 - 3639126
Alignment:
Q  170 taagggtatgtttggattgacttatttgagcttatctaccgacataag 217  Q
    |||||| || ||||||||  ||||||||||||||||||||||||||||    
T  3639079 taagggcatatttggatttgcttatttgagcttatctaccgacataag 3639126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 8705092 - 8705045
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||||||||| || |||||||||||||||  ||||||||||||||||    
T  8705092 tgtttggattggctcatttgagcttatctattgacataagttttgtga 8705045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 209
Target Start/End: Original strand, 17975256 - 17975287
Alignment:
Q  178 tgtttggattgacttatttgagcttatctacc 209  Q
    ||||||||||||||||||||||||||||||||    
T  17975256 tgtttggattgacttatttgagcttatctacc 17975287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 21731575 - 21731622
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    |||||||||||  |||||||||| ||||||| ||||||||||||||||    
T  21731575 tgtttggattggtttatttgagcatatctactgacataagttttgtga 21731622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 21953430 - 21953395
Alignment:
Q  172 agggtatgtttggattgacttatttgagcttatcta 207  Q
    ||||| ||||||||||||||||||||||||||||||    
T  21953430 agggtctgtttggattgacttatttgagcttatcta 21953395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 217
Target Start/End: Complemental strand, 25717744 - 25717705
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataag 217  Q
    ||||||||||| ||||||||||||||| ||||||||||||    
T  25717744 tgtttggattgtcttatttgagcttatgtaccgacataag 25717705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 29126182 - 29126221
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataag 217  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  29126182 tgtttggattggcttatttgagcttatctaccggcataag 29126221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 29657527 - 29657488
Alignment:
Q  186 ttgacttatttgagcttatctaccgacataagttttgtga 225  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  29657527 ttgacttatttgagcttatctaccaacacaagttttgtga 29657488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 213
Target Start/End: Complemental strand, 32769530 - 32769495
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgaca 213  Q
    ||||||||||||||||||| ||||||||||||||||    
T  32769530 tgtttggattgacttattttagcttatctaccgaca 32769495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 39691068 - 39691115
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    |||||| ||||||||||||||||||||||||   ||||||||||||||    
T  39691068 tgtttgaattgacttatttgagcttatctactagcataagttttgtga 39691115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 44798031 - 44797984
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||||||||| || |||| ||||||||||| ||||||||||||||||    
T  44798031 tgtttggattggctgatttaagcttatctactgacataagttttgtga 44797984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 49940086 - 49940133
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    |||||||||||||||||||||||||| || |  |||||||||||||||    
T  49940086 tgtttggattgacttatttgagcttacctgctaacataagttttgtga 49940133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 825408 - 825446
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataa 216  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  825408 tgtttggattgacttatttgagcttatatacctacataa 825446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 2244207 - 2244137
Alignment:
Q  173 gggtatgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaattt 243  Q
    |||| |||||||||||| ||||  ||| |||||||| |||||||||||| ||||||  ||| |||||||||    
T  2244207 gggtctgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaattt 2244137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 208
Target Start/End: Complemental strand, 3891745 - 3891712
Alignment:
Q  175 gtatgtttggattgacttatttgagcttatctac 208  Q
    ||||||||||||||||||||||||| ||||||||    
T  3891745 gtatgtttggattgacttatttgagtttatctac 3891712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 205
Target Start/End: Original strand, 19039566 - 19039599
Alignment:
Q  172 agggtatgtttggattgacttatttgagcttatc 205  Q
    |||||||||||||||||| |||||||||||||||    
T  19039566 agggtatgtttggattgagttatttgagcttatc 19039599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 25571410 - 25571369
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagtt 219  Q
    ||||||||||| |||||||||| |||||||| ||||||||||    
T  25571410 tgtttggattggcttatttgagtttatctactgacataagtt 25571369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 29388765 - 29388720
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgt 223  Q
    ||||||| ||||||||||||| |||||||||  |||||||||||||    
T  29388765 tgtttgggttgacttatttgaccttatctactaacataagttttgt 29388720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 53294033 - 53294078
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgt 223  Q
    |||||||||||||| ||||| |||||||||| ||||| ||||||||    
T  53294033 tgtttggattgactaatttgtgcttatctactgacatgagttttgt 53294078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 53315483 - 53315450
Alignment:
Q  172 agggtatgtttggattgacttatttgagcttatc 205  Q
    ||||| ||||||||||||||||||||||||||||    
T  53315483 agggtctgtttggattgacttatttgagcttatc 53315450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 54575516 - 54575561
Alignment:
Q  172 agggtatgtttggattgacttatttgagcttatctaccgacataag 217  Q
    |||||||||||||||||||||||||||| |||| ||  ||||||||    
T  54575516 agggtatgtttggattgacttatttgagtttatttatagacataag 54575561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 1408105 - 1408061
Alignment:
Q  181 ttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    |||||||| |||||||||||||||||||  ||| |||||||||||    
T  1408105 ttggattggcttatttgagcttatctacatacacaagttttgtga 1408061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 7367967 - 7368003
Alignment:
Q  172 agggtatgtttggattgacttatttgagcttatctac 208  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  7367967 agggtctgtttggattgacttatttgagtttatctac 7368003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 367
Target Start/End: Complemental strand, 7601787 - 7601719
Alignment:
Q  299 tctaatgtagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatcctttgct 367  Q
    |||||| ||| |||||||||  ||| |||  || || |||| |||||||||||||||||||||||||||    
T  7601787 tctaatatagtttataaaaactactcataacatatacaaaaacaatttaactttattttatcctttgct 7601719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 13126490 - 13126542
Alignment:
Q  173 gggtatgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    |||| ||||||||||| ||||||| |||||| ||||  |||||||||||||||    
T  13126490 gggtctgtttggattggcttattttagcttacctactaacataagttttgtga 13126542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 18815183 - 18815127
Alignment:
Q  169 ctaagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    |||||||  ||||||||||| |||||||||||||| ||||   ||||||||||||||    
T  18815183 ctaagggcctgtttggattggcttatttgagcttacctactagcataagttttgtga 18815127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 24169423 - 24169367
Alignment:
Q  169 ctaagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    |||||||  ||||||||||| |||||| ||| |||||||| | ||||||||||||||    
T  24169423 ctaagggcttgtttggattggcttattagagtttatctactggcataagttttgtga 24169367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 206
Target Start/End: Complemental strand, 24193683 - 24193655
Alignment:
Q  178 tgtttggattgacttatttgagcttatct 206  Q
    |||||||||||||||||||||||||||||    
T  24193683 tgtttggattgacttatttgagcttatct 24193655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 25309349 - 25309313
Alignment:
Q  172 agggtatgtttggattgacttatttgagcttatctac 208  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  25309349 agggtctgtttggattgacttatttgaacttatctac 25309313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 55414332 - 55414404
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaa 250  Q
    ||||||||||||||||||||||  ||||||| | ||||| ||||||||  |  ||| |||||||||| |||||    
T  55414332 tgtttggattgacttatttgagagtatctactggcataatttttgtgatgctgtttaggagaatttatgaaaa 55414404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 39)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 39594958 - 39594913
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgt 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  39594958 tgtttggattgacttatttgagcttatctaccgacataagttttgt 39594913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 317
Target Start/End: Original strand, 12857257 - 12857398
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac--atgacaattcgcaaaagnnnn 275  Q
    |||||||||||  |||||||||||||||||  ||| |||||||||||||||  ||  |||||| ||| |||||||||  |||||||||  || |||        
T  12857257 tgtttggattggtttatttgagcttatctattgacgtaagttttgtgaaacttttccggagaacttatgaaaacaacttatgacaattttcacaagcttt 12857356  T
Q  276 nnncagcttatttttgtaatttttctaatgtagcttataaaa 317  Q
       |||||||||||||||| || || ||| ||||||||||||    
T  12857357 tttcagcttatttttgtaagttctccaatatagcttataaaa 12857398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 14331527 - 14331478
Alignment:
Q  168 tctaagggtatgtttggattgacttatttgagcttatctaccgacataag 217  Q
    ||||||||| ||||||||||||||||||||||||||||||| | ||||||    
T  14331527 tctaagggtctgtttggattgacttatttgagcttatctactgtcataag 14331478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 34736440 - 34736493
Alignment:
Q  172 agggtatgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    |||| ||||||||||||||||||||||||||||||   ||||||||||||||||    
T  34736440 agggcatgtttggattgacttatttgagcttatctggtgacataagttttgtga 34736493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 32941626 - 32941546
Alignment:
Q  173 gggtatgtttggattgacttatttgagc-ttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 252  Q
    |||| |||||||||||||||||| |||| |||||||| |||||||||| ||||| ||| ||| |||||| ||| |||||||    
T  32941626 gggtctgtttggattgacttattagagctttatctactgacataagttctgtgagaccgtttgggagaacttatgaaaaca 32941546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 35299926 - 35299866
Alignment:
Q  168 tctaagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtgaaac 228  Q
    ||||||||  ||||||||||||||||||||||||||||||  ||||| ||||||| |||||    
T  35299926 tctaagggcctgtttggattgacttatttgagcttatctattgacatgagttttgagaaac 35299866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 41419479 - 41419423
Alignment:
Q  169 ctaagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||| || |||||||||||||||||||||||| |||||| ||||||| ||||||||    
T  41419479 ctaagtgtttgtttggattgacttatttgagctaatctactgacataaattttgtga 41419423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 41534598 - 41534542
Alignment:
Q  169 ctaagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||| || |||||||||||||||||||||||| |||||| ||||||| ||||||||    
T  41534598 ctaagtgtttgtttggattgacttatttgagctaatctactgacataaattttgtga 41534542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 208
Target Start/End: Complemental strand, 14932456 - 14932417
Alignment:
Q  169 ctaagggtatgtttggattgacttatttgagcttatctac 208  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  14932456 ctaagagtatgtttggattgacttatttgagcttatctac 14932417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 9107240 - 9107194
Alignment:
Q  179 gtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||||||||||||||||||| |||||||  ||||||||||||||||    
T  9107240 gtttggattgacttatttgagtttatctagtgacataagttttgtga 9107194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 7674796 - 7674751
Alignment:
Q  180 tttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||||||| |||||||||||||||||||| || ||||||||||||    
T  7674796 tttggattggcttatttgagcttatctacctacttaagttttgtga 7674751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 7705907 - 7705964
Alignment:
Q  168 tctaagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||||||  ||||||||||||||||||||||| |||||||   ||||||||||||||    
T  7705907 tctaagggcctgtttggattgacttatttgagcatatctactagcataagttttgtga 7705964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 9174975 - 9174938
Alignment:
Q  170 taagggtatgtttggattgacttatttgagcttatcta 207  Q
    |||||| |||||||||||||||||||||||||||||||    
T  9174975 taagggcatgtttggattgacttatttgagcttatcta 9174938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 11064814 - 11064770
Alignment:
Q  181 ttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||||||| ||||||||| ||||||||| |||||||||||||||    
T  11064814 ttggattgatttatttgagtttatctaccaacataagttttgtga 11064770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 360
Target Start/End: Original strand, 16937802 - 16937986
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac--atgacaattcgcaaaagnnnn 275  Q
    ||||||||||| |||||||||||||||||||   |||||||||||||| |   ||| | |||| ||| ||||||| |  ||||||| |  || |||        
T  16937802 tgtttggattggcttatttgagcttatctactagcataagttttgtgagagtgtttggaagaacttatgaaaacagcttatgacaaatttcataagcttt 16937901  T
Q  276 nnncagcttatttttgtaatttttctaatgtagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatc 360  Q
       |||||||||||  ||| || || ||| |||| |||||||| ||||||||| || || |||| ||||||||| ||||||||||    
T  16937902 tttcagcttattttcctaagttctccaatatagcgtataaaaacaacttatagcatatacaaaaacaatttaacgttattttatc 16937986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 22209746 - 22209786
Alignment:
Q  181 ttggattgacttatttgagcttatctaccgacataagtttt 221  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  22209746 ttggattgacttatttgagcttatctactggcataagtttt 22209786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 499650 - 499689
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataag 217  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  499650 tgtttggattgacttatttgagcttacctactgacataag 499689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 3932595 - 3932642
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    |||||||||||||| ||||||||||||||| | ||||||| |||||||    
T  3932595 tgtttggattgactaatttgagcttatctaacaacataagctttgtga 3932642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 10640104 - 10640057
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||||||||  |||||||||| |||||||| ||||||||||||||||    
T  10640104 tgtttggattagcttatttgagtttatctactgacataagttttgtga 10640057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 12425716 - 12425677
Alignment:
Q  186 ttgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  12425716 ttgacttatttgagcttatctactgtcataagttttgtga 12425677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 17369354 - 17369316
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataa 216  Q
    ||||||||||||||||||||| ||||||||| |||||||    
T  17369354 tgtttggattgacttatttgaacttatctactgacataa 17369316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 32010096 - 32010054
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttt 220  Q
    |||||||||||||||||||||| ||||||||  ||||||||||    
T  32010096 tgtttggattgacttatttgagtttatctactcacataagttt 32010054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 36796626 - 36796664
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataa 216  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  36796626 tgtttggattgacttatttgagcttatctaatgacataa 36796664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 208
Target Start/End: Complemental strand, 42646829 - 42646791
Alignment:
Q  170 taagggtatgtttggattgacttatttgagcttatctac 208  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  42646829 taagggtctgtttggattgacttacttgagcttatctac 42646791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 4625872 - 4625835
Alignment:
Q  186 ttgacttatttgagcttatctaccgacataagttttgt 223  Q
    ||||||||||||||||||||||| || |||||||||||    
T  4625872 ttgacttatttgagcttatctacggaaataagttttgt 4625835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 6096696 - 6096651
Alignment:
Q  180 tttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||||||||| ||||||| ||||||||| | ||||||||||||||    
T  6096696 tttggattgacgtatttgaacttatctactggcataagttttgtga 6096651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 9202671 - 9202712
Alignment:
Q  182 tggattgacttatttgagcttatctaccgacataagttttgt 223  Q
    ||||||||||||||||||||||||| | | ||||||||||||    
T  9202671 tggattgacttatttgagcttatctcctggcataagttttgt 9202712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 32942745 - 32942700
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgt 223  Q
    |||||||||||||||||  |||||| ||||| ||||||||||||||    
T  32942745 tgtttggattgacttatacgagcttttctactgacataagttttgt 32942700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 42582606 - 42582679
Alignment:
Q  177 atgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaa 250  Q
    |||||||||||||||||||||||  ||||||  || |||||||||||||  |  |||||||||| ||| |||||    
T  42582606 atgtttggattgacttatttgagggtatctaatgatataagttttgtgaggctgttttggagaacttaagaaaa 42582679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 8651263 - 8651299
Alignment:
Q  170 taagggtatgtttggattgacttatttgagcttatct 206  Q
    |||||| |||||||||||| |||||||||||||||||    
T  8651263 taagggcatgtttggattgccttatttgagcttatct 8651299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 11700314 - 11700266
Alignment:
Q  177 atgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    |||||||||||  |||||||||||||||| || | ||||||||||||||    
T  11700314 atgtttggatttgcttatttgagcttatccactggcataagttttgtga 11700266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 12857624 - 12857700
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 254  Q
    |||||||||||  ||||||||||| |||||  ||| |||||||||||||||  ||  |||||| ||| |||||||||    
T  12857624 tgtttggattggtttatttgagctcatctattgacgtaagttttgtgaaactgttccggagaacttatgaaaacaac 12857700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 14257601 - 14257569
Alignment:
Q  176 tatgtttggattgacttatttgagcttatctac 208  Q
    ||||||||||||||||||||||| |||||||||    
T  14257601 tatgtttggattgacttatttgaacttatctac 14257569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 14706205 - 14706241
Alignment:
Q  180 tttggattgacttatttgagcttatctaccgacataa 216  Q
    |||||||||||||||||||||||| |||| |||||||    
T  14706205 tttggattgacttatttgagcttacctactgacataa 14706241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 15015982 - 15015922
Alignment:
Q  190 cttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaa 250  Q
    ||||||||||||||||||| |||||||| ||||||| ||  ||| |||||| ||| |||||    
T  15015982 cttatttgagcttatctactgacataagctttgtgagactgtttgggagaacttatgaaaa 15015922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 32197884 - 32197844
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagt 218  Q
    ||||||||||||||| |||||| |||||||| |||||||||    
T  32197884 tgtttggattgacttttttgagtttatctactgacataagt 32197844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 207
Target Start/End: Complemental strand, 35963379 - 35963351
Alignment:
Q  179 gtttggattgacttatttgagcttatcta 207  Q
    |||||||||||||||||||||||||||||    
T  35963379 gtttggattgacttatttgagcttatcta 35963351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 41535532 - 41535456
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 254  Q
    |||| |||||| ||||||| |||||||||||  | || |||||||||||||  ||| |||||| ||| |||||||||    
T  41535532 tgttcggattggcttatttaagcttatctacttatatcagttttgtgaaacagtttgggagaacttatgaaaacaac 41535456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 42647041 - 42647005
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacat 214  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  42647041 tgtttggattggcttatttgagcttatctactgacat 42647005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 27317530 - 27317454
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 254  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||  |||  ||||| ||| |||||||||    
T  27317530 tgtttggattgacttatttgagcttatctaccgacataagttttatgagactgtttgagagaacttatgaaaacaac 27317454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 4607076 - 4607000
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 254  Q
    ||||||||||| |||||||||||||||||||| | ||||||||||||| || |||| |||||| ||  |||||||||    
T  4607076 tgtttggattggcttatttgagcttatctaccaatataagttttgtgagactatttgggagaacttgtgaaaacaac 4607000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 18179100 - 18179024
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 254  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||| |||  |   ||||| |||||||||||||    
T  18179100 tgtttggattgacttatttgagcttatctactaacataagttttgtgagaccgctcaagagaacttacgaaaacaac 18179024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 30331902 - 30331830
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaa 250  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||| ||  ||| |||||| ||| |||||    
T  30331902 tgtttggattgacttatttcagcttatctactgacataagttttgtgagactgtttgggagaacttatgaaaa 30331830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 15305825 - 15305775
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaac 228  Q
    ||||||||||| ||||||||||||||||||  |||||||||||||||||||    
T  15305825 tgtttggattggcttatttgagcttatctattgacataagttttgtgaaac 15305775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 2416470 - 2416414
Alignment:
Q  172 agggtatgtttggattgacttatttgagcttatctaccgacataagttttgtgaaac 228  Q
    |||| |||||| |||||||||||||||| ||||||||  ||||||||||||||||||    
T  2416470 agggcatgtttagattgacttatttgagtttatctactaacataagttttgtgaaac 2416414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 3312237 - 3312181
Alignment:
Q  169 ctaagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    |||||||  ||||||||||| ||||||||||||||||||| ||| ||||||||||||    
T  3312237 ctaagggcttgtttggattggcttatttgagcttatctactgacgtaagttttgtga 3312181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 42419942 - 42419870
Alignment:
Q  180 tttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 252  Q
    |||||||||||||||||||| |||||| | |||||||||||| ||| ||  ||| |||||| |||||||||||    
T  42419942 tttggattgacttatttgagtttatcttctgacataagttttttgagactgtttgggagaacttacgaaaaca 42419870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 31744449 - 31744406
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagtttt 221  Q
    ||||||||||| |||||||| |||||||||||||||||||||||    
T  31744449 tgtttggattggcttatttgggcttatctaccgacataagtttt 31744406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 39073613 - 39073668
Alignment:
Q  170 taagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||||||||||| |||||| ||||||||| | |||||||||||||| ||||||||    
T  39073613 taagggtatgtttagattgatttatttgagttcatctaccgacataatttttgtga 39073668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 22878251 - 22878210
Alignment:
Q  176 tatgtttggattgacttatttgagcttatctaccgacataag 217  Q
    |||||||||||||||||||||||||||||| || ||||||||    
T  22878251 tatgtttggattgacttatttgagcttatccactgacataag 22878210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 28803451 - 28803488
Alignment:
Q  180 tttggattgacttatttgagcttatctaccgacataag 217  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  28803451 tttggattgacttatttgagcttatctaccggcataag 28803488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 6772446 - 6772482
Alignment:
Q  172 agggtatgtttggattgacttatttgagcttatctac 208  Q
    |||| ||||||||||||||||||||||||||||||||    
T  6772446 agggcatgtttggattgacttatttgagcttatctac 6772482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 7928208 - 7928264
Alignment:
Q  169 ctaagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    |||||||  ||||||||||| ||||||||||||||||||  |||||||||| |||||    
T  7928208 ctaagggcctgtttggattggcttatttgagcttatctattgacataagttgtgtga 7928264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 18525158 - 18525198
Alignment:
Q  176 tatgtttggattgacttatttgagcttatctaccgacataa 216  Q
    |||||||| |||||||||||||||||||||||| |||||||    
T  18525158 tatgtttgaattgacttatttgagcttatctacagacataa 18525198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 23974406 - 23974486
Alignment:
Q  172 agggtatgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 252  Q
    |||||||||||||||||||||||||| | |||||||| ||||| || || |||| |   |||||||||| ||| |||||||    
T  23974406 agggtatgtttggattgacttatttgggtttatctactgacatgagattagtgagattgttttggagaacttatgaaaaca 23974486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 209
Target Start/End: Original strand, 3078527 - 3078558
Alignment:
Q  178 tgtttggattgacttatttgagcttatctacc 209  Q
    ||||||||||||||||||||||||||||||||    
T  3078527 tgtttggattgacttatttgagcttatctacc 3078558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 10619139 - 10619186
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    |||||||||||||| ||||||| |||||||| |||| |||||||||||    
T  10619139 tgtttggattgactcatttgagtttatctactgacacaagttttgtga 10619186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 15370242 - 15370281
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataag 217  Q
    ||||||||||||||||||||||||||||||| | ||||||    
T  15370242 tgtttggattgacttatttgagcttatctactggcataag 15370281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 20952507 - 20952432
Alignment:
Q  177 atgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 252  Q
    |||||||||||||||||||||||||||| ||| | || ||||||||| | || ||||  ||||| ||| |||||||    
T  20952507 atgtttggattgacttatttgagcttatatactggcaaaagttttgttagactatttaagagaacttatgaaaaca 20952432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 26202179 - 26202132
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    |||||||||| |||||||||| ||||||| | ||||||||||||||||    
T  26202179 tgtttggattaacttatttgaacttatctgctgacataagttttgtga 26202132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 31561664 - 31561711
Alignment:
Q  181 ttggattgacttatttgagcttatctaccgacataagttttgtgaaac 228  Q
    ||||||||||||||||||| ||||||||  ||||||||||||| ||||    
T  31561664 ttggattgacttatttgagattatctactaacataagttttgtaaaac 31561711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 44119933 - 44119866
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttac 245  Q
    ||||||||||| ||||||||||||||  | | |||||||||||||||||||  |||  ||||||||||    
T  44119933 tgtttggattggcttatttgagcttacatgctgacataagttttgtgaaactgtttgagagaatttac 44119866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 218
Target Start/End: Complemental strand, 26548598 - 26548564
Alignment:
Q  184 gattgacttatttgagcttatctaccgacataagt 218  Q
    ||||| |||||||||||||||||||||||||||||    
T  26548598 gattggcttatttgagcttatctaccgacataagt 26548564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 35329729 - 35329767
Alignment:
Q  170 taagggtatgtttggattgacttatttgagcttatctac 208  Q
    ||||||| ||||||||||||||||| |||||||||||||    
T  35329729 taagggtgtgtttggattgacttatgtgagcttatctac 35329767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 40837356 - 40837394
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataa 216  Q
    ||||||||||| ||||||||||||||||||| |||||||    
T  40837356 tgtttggattggcttatttgagcttatctactgacataa 40837394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 360
Target Start/End: Complemental strand, 41407096 - 41407042
Alignment:
Q  306 tagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatc 360  Q
    |||||||| |||| ||||||||| || || ||||||| |||||||||||||||||    
T  41407096 tagcttatgaaaacaacttatagaatatacaaaagcagtttaactttattttatc 41407042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 207
Target Start/End: Complemental strand, 750885 - 750856
Alignment:
Q  178 tgtttggattgacttatttgagcttatcta 207  Q
    ||||||||||||||||||||||||||||||    
T  750885 tgtttggattgacttatttgagcttatcta 750856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 4350847 - 4350802
Alignment:
Q  172 agggtatgtttggattgacttatttgagcttatctaccgacataag 217  Q
    ||||| ||||||||||| ||||||||||||| ||||| ||||||||    
T  4350847 agggtttgtttggattggcttatttgagcttctctactgacataag 4350802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 26143561 - 26143635
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 254  Q
    ||||||||||| ||| ||||||||||||||| ||||||| |||  ||| ||  ||| |||||| |||||||||||||    
T  26143561 tgtttggattggcttgtttgagcttatctactgacataaattt--tgagactgtttgggagaacttacgaaaacaac 26143635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 35810012 - 35809979
Alignment:
Q  184 gattgacttatttgagcttatctaccgacataag 217  Q
    ||||||||||||||||||||||||||| ||||||    
T  35810012 gattgacttatttgagcttatctaccggcataag 35809979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 40059381 - 40059418
Alignment:
Q  179 gtttggattgacttatttgagcttatctaccgacataa 216  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  40059381 gtttggattgacttatttgagtttatctactgacataa 40059418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 40085281 - 40085318
Alignment:
Q  179 gtttggattgacttatttgagcttatctaccgacataa 216  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  40085281 gtttggattgacttatttgagtttatctactgacataa 40085318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 44590173 - 44590128
Alignment:
Q  180 tttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||||||| |||||||||| |||||||  ||||||||||||||||    
T  44590173 tttggattggcttatttgagtttatctatagacataagttttgtga 44590128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 2964722 - 2964766
Alignment:
Q  172 agggtatgtttggattgacttatttgagcttatctaccgacataa 216  Q
    |||| ||||||||||| |||||||||| ||||||||||| |||||    
T  2964722 agggcatgtttggattaacttatttgaacttatctaccggcataa 2964766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 13867031 - 13866999
Alignment:
Q  176 tatgtttggattgacttatttgagcttatctac 208  Q
    ||||||||||||||| |||||||||||||||||    
T  13867031 tatgtttggattgacctatttgagcttatctac 13866999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 38602478 - 38602431
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38602478 tgtttggattgacttatttgagcttatctactgacataagttttgtga 38602431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 30251373 - 30251447
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 252  Q
    ||||||||||| ||||||||||||||||||| ||||||||||| |||| ||  ||| |||||| |||||||||||    
T  30251373 tgtttggattggcttatttgagcttatctactgacataagtttcgtgagactgtttgggagaacttacgaaaaca 30251447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 169 - 359
Target Start/End: Original strand, 10758167 - 10758358
Alignment:
Q  169 ctaagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac--atgacaattcgc 266  Q
    ||||||| ||||||| |||||||||||||| ||||||| |  ||||||||||||||| ||  |||   |||||||| ||||||| |  |||||||||  |    
T  10758167 ctaagggcatgtttgaattgacttatttgaacttatctgctaacataagttttgtgagactgtttgatagaatttatgaaaacagcttatgacaattttc 10758266  T
Q  267 aaaagnnnnnnncagcttatttttgtaatttttctaatgtagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttat 359  Q
    |||||       |||||| ||||  |||  || ||||| ||||||||||| | ||||||||| || || |||| |||||||||||||||||||    
T  10758267 aaaagcttttttcagcttgttttcataa-gttgctaatatagcttataaagacaacttatagcatatacaaaaacaatttaactttattttat 10758358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 180 - 252
Target Start/End: Original strand, 43717855 - 43717927
Alignment:
Q  180 tttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 252  Q
    ||||||||| ||||||||||||||||||  |||||||||||||||| || |||| |||||| ||| |||||||    
T  43717855 tttggattggcttatttgagcttatctattgacataagttttgtgagactatttgggagaacttatgaaaaca 43717927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 36963268 - 36963347
Alignment:
Q  173 gggtatgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 252  Q
    |||| ||||||||||| |||||||||||| |||||| | |||||||||||||| ||  ||| |||||| |||| ||||||    
T  36963268 gggtctgtttggattggcttatttgagctaatctactggcataagttttgtgagactgtttgggagaacttacaaaaaca 36963347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 1096642 - 1096594
Alignment:
Q  177 atgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||||||||||||||||||||| |||| ||  ||||||||||||||||    
T  1096642 atgtttggattgacttatttgagtttatttagtgacataagttttgtga 1096594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 5088279 - 5088243
Alignment:
Q  170 taagggtatgtttggattgacttatttgagcttatct 206  Q
    ||||||||||||||||||||||||||| |||||||||    
T  5088279 taagggtatgtttggattgacttatttcagcttatct 5088243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 29818855 - 29818927
Alignment:
Q  170 taagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatt 242  Q
    |||||| |||||||||||| | |||||||||||||||||   |||||||||||||| ||  ||| ||||||||    
T  29818855 taagggcatgtttggattggcatatttgagcttatctactatcataagttttgtgagactgtttcggagaatt 29818927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 2487915 - 2487966
Alignment:
Q  166 aatctaagggtatgtttggattgacttatttgagcttatctaccgacataag 217  Q
    |||||||||| |||||||||||| |||||||||| | |||||| ||||||||    
T  2487915 aatctaagggcatgtttggattggcttatttgagttcatctactgacataag 2487966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 9130238 - 9130285
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||||||||  ||||||||||||||||||| | ||||||||||||||    
T  9130238 tgtttggattagcttatttgagcttatctactggcataagttttgtga 9130285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 32213270 - 32213223
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||||||||| ||||||||||||||| ||| || |||||||||||||    
T  32213270 tgtttggattgtcttatttgagcttatatactgatataagttttgtga 32213223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 35534532 - 35534579
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||| || ||||||||||||||||||||||  |||||||||||||||    
T  35534532 tgtttagaatgacttatttgagcttatctactaacataagttttgtga 35534579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 39551130 - 39551205
Alignment:
Q  180 tttggattgacttatttgagcttatctaccgacataag-ttttgtgaaaccattttggagaatttacgaaaacaac 254  Q
    |||||||||||||||||||| |||||||| || |||||  ||||||||||  ||| |||||||||| | |||||||    
T  39551130 tttggattgacttatttgagattatctacggatataagcatttgtgaaactgtttgggagaatttatggaaacaac 39551205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 2606200 - 2606162
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataa 216  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  2606200 tgtttggattgacttattcgagcttatctactgacataa 2606162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 217
Target Start/End: Complemental strand, 4560652 - 4560614
Alignment:
Q  179 gtttggattgacttatttgagcttatctaccgacataag 217  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  4560652 gtttggattgacttatttgagcttatctattgacataag 4560614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 252
Target Start/End: Complemental strand, 15180690 - 15180617
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 252  Q
    ||||||||||| |||||||||| |||||||| | |||||||||| ||| | | |||||||||||||  |||||||    
T  15180690 tgtttggattggcttatttgagtttatctactgccataagttttatgaga-ctttttggagaatttctgaaaaca 15180617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 29417522 - 29417568
Alignment:
Q  170 taagggtatgtttggattgacttatttgagcttatctaccgacataa 216  Q
    |||||||||||||| |||| ||||||| |||||||| ||||||||||    
T  29417522 taagggtatgtttgaattggcttattttagcttatcgaccgacataa 29417568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 35374371 - 35374413
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttt 220  Q
    |||||||||||| ||||||||||||||||||| ||| ||||||    
T  35374371 tgtttggattgagttatttgagcttatctacccacacaagttt 35374413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 40859703 - 40859749
Alignment:
Q  179 gtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    |||||||||| ||||||||||||||||| |  |||||||||||||||    
T  40859703 gtttggattggcttatttgagcttatctgctaacataagttttgtga 40859749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 42893409 - 42893455
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtg 224  Q
    |||||||||| ||||||||||| |||||||||| ||||| |||||||    
T  42893409 tgtttggattaacttatttgagtttatctaccggcataatttttgtg 42893455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 12496993 - 12497038
Alignment:
Q  180 tttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    |||||||||| |||||||||||||||| | | ||||||||||||||    
T  12496993 tttggattgatttatttgagcttatctcctggcataagttttgtga 12497038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 216
Target Start/End: Original strand, 23996557 - 23996586
Alignment:
Q  187 tgacttatttgagcttatctaccgacataa 216  Q
    ||||||||||||||||||||||||||||||    
T  23996557 tgacttatttgagcttatctaccgacataa 23996586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 1057987 - 1058043
Alignment:
Q  169 ctaagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||||| | ||||| | || |||||||||||||||||||  |||||||||||||||    
T  1057987 ctaagggcaagtttgaactggcttatttgagcttatctacttacataagttttgtga 1058043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 10727505 - 10727465
Alignment:
Q  168 tctaagggtatgtttggattgacttatttgagcttatctac 208  Q
    |||| |||| |||||||||||||||||||||| ||||||||    
T  10727505 tctatgggtctgtttggattgacttatttgagtttatctac 10727465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 35928640 - 35928688
Alignment:
Q  169 ctaagggtatgtttggattgacttatttgagcttatctaccgacataag 217  Q
    ||||| || ||||||||||| ||||||| ||||||||||| ||||||||    
T  35928640 ctaagagtctgtttggattgtcttattttagcttatctactgacataag 35928688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 41589737 - 41589661
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 254  Q
    ||||| |||||  |||||||||||| ||||| |||||||| ||| ||| ||  |||||||||| ||| |||||||||    
T  41589737 tgtttagattggtttatttgagcttgtctactgacataagctttttgagactgttttggagaacttatgaaaacaac 41589661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 21405067 - 21405120
Alignment:
Q  172 agggtatgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  21405067 agggtctgtttggattgacttatttgagcttatatactgacataagttttgtga 21405120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 254
Target Start/End: Original strand, 10645298 - 10645380
Alignment:
Q  172 agggtatgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 254  Q
    ||||||||||||||||| || ||||||| |||||||  |||||||||||||| | ||  ||| |||||| ||| |||||||||    
T  10645298 agggtatgtttggattggctaatttgaggttatctaatgacataagttttgtaagactgtttgggagaacttatgaaaacaac 10645380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 35069531 - 35069576
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgt 223  Q
    |||||| |||| ||||||||||||||||||| ||||||||||||||    
T  35069531 tgtttgtattggcttatttgagcttatctactgacataagttttgt 35069576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 4163305 - 4163261
Alignment:
Q  177 atgtttggattgacttatttgagcttatctaccgacataagtttt 221  Q
    |||||||||||| ||||||||||||||||||| | ||||||||||    
T  4163305 atgtttggattggcttatttgagcttatctactggcataagtttt 4163261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 4224926 - 4224882
Alignment:
Q  177 atgtttggattgacttatttgagcttatctaccgacataagtttt 221  Q
    |||||||||||| ||||||||||||||||||| | ||||||||||    
T  4224926 atgtttggattggcttatttgagcttatctactggcataagtttt 4224882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 31776189 - 31776221
Alignment:
Q  176 tatgtttggattgacttatttgagcttatctac 208  Q
    |||||||||||||||||||||||||||||||||    
T  31776189 tatgtttggattgacttatttgagcttatctac 31776221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 33027750 - 33027706
Alignment:
Q  171 aagggtatgtttggattgacttatttgagcttatctaccgacata 215  Q
    ||||| ||||||||||||| |||||||||||||||||| ||||||    
T  33027750 aagggcatgtttggattgatttatttgagcttatctactgacata 33027706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 33089658 - 33089582
Alignment:
Q  177 atgtttggattgacttatttgagcttatctaccgacataagt-tttgtgaaaccattttggagaatttacgaaaaca 252  Q
    |||||||| ||||||||||||||||||||||| |||||| || ||||||| || ||||  ||||| ||| |||||||    
T  33089658 atgtttgggttgacttatttgagcttatctactgacatatgtatttgtgagactatttcagagaacttatgaaaaca 33089582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 2455397 - 2455334
Alignment:
Q  191 ttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 254  Q
    ||||||||||||||||||  |||||||||| ||||||| ||||  ||||| ||| |||||||||    
T  2455397 ttatttgagcttatctacaaacataagtttggtgaaactatttgagagaacttatgaaaacaac 2455334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 217
Target Start/End: Complemental strand, 2457092 - 2457053
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataag 217  Q
    ||||||||||| |||||||||| |||||||||||||||||    
T  2457092 tgtttggattggcttatttgagattatctaccgacataag 2457053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 6536771 - 6536716
Alignment:
Q  170 taagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    |||||| ||||||||||| | ||||||||| ||| |||| ||||||||||||||||    
T  6536771 taagggcatgtttggattaaattatttgagtttacctactgacataagttttgtga 6536716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 18612462 - 18612411
Alignment:
Q  173 gggtatgtttggattgacttatttgagcttatctaccgacataagttttgtg 224  Q
    |||| |||||||||| |||| ||||||||| || ||||||||||||||||||    
T  18612462 gggtttgtttggattaacttttttgagcttttcaaccgacataagttttgtg 18612411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 835180 - 835226
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtg 224  Q
    ||||||||||| |||||||||||||||||||   |||||||||||||    
T  835180 tgtttggattgccttatttgagcttatctactagcataagttttgtg 835226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 208
Target Start/End: Original strand, 9202904 - 9202934
Alignment:
Q  178 tgtttggattgacttatttgagcttatctac 208  Q
    |||||||||||||||||||||||||||||||    
T  9202904 tgtttggattgacttatttgagcttatctac 9202934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 364
Target Start/End: Complemental strand, 24626316 - 24626258
Alignment:
Q  306 tagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatccttt 364  Q
    |||||||| |||| ||||||||| || || |||| |||||||||||| |||||||||||    
T  24626316 tagcttatgaaaacaacttatagaatatacaaaaacaatttaactttgttttatccttt 24626258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 24982856 - 24982794
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaa 240  Q
    |||||||||||||| ||| || |||||||||  ||||||||||||||| ||  ||||||||||    
T  24982856 tgtttggattgactaattagatcttatctactaacataagttttgtgagactgttttggagaa 24982794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 204
Target Start/End: Complemental strand, 29249552 - 29249518
Alignment:
Q  170 taagggtatgtttggattgacttatttgagcttat 204  Q
    |||||| ||||||||||||||||||||||||||||    
T  29249552 taagggcatgtttggattgacttatttgagcttat 29249518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 34404645 - 34404691
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtg 224  Q
    |||||||||| ||||||||||| ||||| || |||||||||||||||    
T  34404645 tgtttggatttacttatttgagtttatcaactgacataagttttgtg 34404691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 367
Target Start/End: Complemental strand, 18076217 - 18076156
Alignment:
Q  306 tagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatcctttgct 367  Q
    ||||||||||||| ||||||||| |  ||||||| ||||||||| ||||||| || ||||||    
T  18076217 tagcttataaaaacaacttatagcaattagaaaaacaatttaaccttattttctcttttgct 18076156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 32729060 - 32729109
Alignment:
Q  176 tatgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||| |||||||||||||||||| ||||||||  || ||||||||||||    
T  32729060 tatgtgtggattgacttatttgagtttatctacaaacttaagttttgtga 32729109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 35071643 - 35071598
Alignment:
Q  180 tttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||||||||||||||| ||||||| ||| | ||||||||||||||    
T  35071643 tttggattgacttatttcagcttatatactgccataagttttgtga 35071598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 2455954 - 2455922
Alignment:
Q  185 attgacttatttgagcttatctaccgacataag 217  Q
    |||||||||||||||||||||||||| ||||||    
T  2455954 attgacttatttgagcttatctaccggcataag 2455922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 10452333 - 10452369
Alignment:
Q  171 aagggtatgtttggattgacttatttgagcttatcta 207  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  10452333 aagggcatgtttggattggcttatttgagcttatcta 10452369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 208
Target Start/End: Complemental strand, 12111116 - 12111088
Alignment:
Q  180 tttggattgacttatttgagcttatctac 208  Q
    |||||||||||||||||||||||||||||    
T  12111116 tttggattgacttatttgagcttatctac 12111088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 19800376 - 19800408
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccg 210  Q
    |||||||||||| ||||||||||||||||||||    
T  19800376 tgtttggattgatttatttgagcttatctaccg 19800408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 30536884 - 30536924
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagt 218  Q
    |||||||||||||||||||||| ||||||||  ||||||||    
T  30536884 tgtttggattgacttatttgagtttatctacttacataagt 30536924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 584196 - 584123
Alignment:
Q  179 gtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 252  Q
    ||||||||||||||||||||||||||||||   |||||||| ||||| ||  |||||||||||||| |||||||    
T  584196 gtttggattgacttatttgagcttatctactagcataagttctgtgagactgttttggagaatttatgaaaaca 584123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 24085258 - 24085331
Alignment:
Q  179 gtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 252  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||| ||   ||||||||| ||| |||||||    
T  24085258 gtttggattggcttatttgagcttatctaccggcataagttttgtgagactggtttggagaacttatgaaaaca 24085331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 34610721 - 34610798
Alignment:
Q  174 ggtatgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaac 251  Q
    |||||||||| || ||||||||||||||||||||| ||||||||||||||  ||| |||| |||||| ||| ||||||    
T  34610721 ggtatgtttgtatggacttatttgagcttatctactgacataagttttgtacaactatttgggagaacttatgaaaac 34610798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 16072960 - 16073007
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||    
T  16072960 tgtttggattgacttatttgagcttatctaatgacataagttttgtga 16073007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 25447164 - 25447211
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||    
T  25447164 tgtttggattgacttatttgagtttatctactgacataagttttgtga 25447211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 364
Target Start/End: Original strand, 36631075 - 36631158
Alignment:
Q  281 gcttatttttgtaatttttctaatgtagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatccttt 364  Q
    |||||||||  ||| || || ||| ||||| ||||||| ||||||||| ||||| |||| ||||||||||||| ||||||||||    
T  36631075 gcttattttcataagttctccaatatagctcataaaaacaacttatagcatgtacaaaaacaatttaactttactttatccttt 36631158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 42799885 - 42799960
Alignment:
Q  178 tgtttggattgacttatttgagctt-atctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 252  Q
    ||||||||||| ||||||||||||| |||||| |||||| ||||||||||||  ||| |||||| ||| |||||||    
T  42799885 tgtttggattggcttatttgagctttatctactgacatatgttttgtgaaactctttgggagaacttatgaaaaca 42799960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 26990143 - 26990181
Alignment:
Q  177 atgtttggattgacttatttgagcttatctaccgacata 215  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  26990143 atgtttggattgacttatttgagcttatctactgacata 26990181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 31615473 - 31615515
Alignment:
Q  172 agggtatgtttggattgacttatttgagcttatctaccgacat 214  Q
    |||||||||||||||||||||||||||| |||||||| |||||    
T  31615473 agggtatgtttggattgacttatttgagtttatctacggacat 31615515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 18405752 - 18405797
Alignment:
Q  180 tttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    |||||||||  |||||||||||||||||| ||||||||||||||||    
T  18405752 tttggattggtttatttgagcttatctactgacataagttttgtga 18405797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 26911740 - 26911699
Alignment:
Q  180 tttggattgacttatttgagcttatctaccgacataagtttt 221  Q
    |||||||||||||||||||| |||||||| ||||||||||||    
T  26911740 tttggattgacttatttgagtttatctactgacataagtttt 26911699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 32663795 - 32663754
Alignment:
Q  172 agggtatgtttggattgacttatttgagcttatctaccgaca 213  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  32663795 agggtctgtttggattggcttatttgagcttatctaccgaca 32663754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 33405114 - 33405155
Alignment:
Q  181 ttggattgacttatttgagcttatctaccgacataagttttg 222  Q
    ||||||||||||||||||| |||||||| |||||||||||||    
T  33405114 ttggattgacttatttgagtttatctactgacataagttttg 33405155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 51929277 - 51929350
Alignment:
Q  179 gtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 252  Q
    |||||||||||||||||||| ||||| ||| | |||||||||||||| || ||||  ||||||||  |||||||    
T  51929277 gtttggattgacttatttgaccttatttactggcataagttttgtgatactatttgagagaatttctgaaaaca 51929350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 20210841 - 20210885
Alignment:
Q  172 agggtatgtttggattgacttatttgagcttatctaccgacataa 216  Q
    |||||||||||||||||| ||||||||| |||||||| |||||||    
T  20210841 agggtatgtttggattgatttatttgaggttatctactgacataa 20210885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 2080998 - 2081041
Alignment:
Q  174 ggtatgtttggattgacttatttgagcttatctaccgacataag 217  Q
    ||||||||||||||||||||||||| ||||||||  ||||||||    
T  2080998 ggtatgtttggattgacttatttgaacttatctattgacataag 2081041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 20170633 - 20170680
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||||||||| ||||||||||||||||||  ||||||||||| ||||    
T  20170633 tgtttggattggcttatttgagcttatctagtgacataagtttagtga 20170680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 24684741 - 24684784
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagtttt 221  Q
    |||||||||| |||||||||||||||||||| | ||||||||||    
T  24684741 tgtttggattaacttatttgagcttatctactggcataagtttt 24684784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 32582892 - 32582845
Alignment:
Q  174 ggtatgtttggattgacttatttgagcttatctaccgacataagtttt 221  Q
    |||||||||||||||||||||||||| ||||||||   ||||||||||    
T  32582892 ggtatgtttggattgacttatttgagtttatctactaccataagtttt 32582845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 208
Target Start/End: Complemental strand, 46407894 - 46407863
Alignment:
Q  177 atgtttggattgacttatttgagcttatctac 208  Q
    ||||||||||||||||||||||||||||||||    
T  46407894 atgtttggattgacttatttgagcttatctac 46407863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 46478818 - 46478771
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||||||||||||||||||||| |||||||  || ||||||||||||    
T  46478818 tgtttggattgacttatttgagcatatctactaacgtaagttttgtga 46478771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 2100092 - 2100126
Alignment:
Q  172 agggtatgtttggattgacttatttgagcttatct 206  Q
    ||||| |||||||||||||||||||||||||||||    
T  2100092 agggtctgtttggattgacttatttgagcttatct 2100126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 9832674 - 9832724
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaac 228  Q
    ||||| ||||||||||||||||||||| ||  |||||||||||||| ||||    
T  9832674 tgtttagattgacttatttgagcttatttattgacataagttttgtcaaac 9832724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 21872211 - 21872253
Alignment:
Q  175 gtatgtttggattgacttatttgagcttatctaccgacataag 217  Q
    ||||||||||||| |||||||||| ||||||||| ||||||||    
T  21872211 gtatgtttggattaacttatttgatcttatctactgacataag 21872253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 46407655 - 46407617
Alignment:
Q  180 tttggattgacttatttgagcttatctaccgacataagt 218  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  46407655 tttggattggctaatttgagcttatctaccgacataagt 46407617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 367
Target Start/End: Complemental strand, 5331318 - 5331253
Alignment:
Q  302 aatgtagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatcctttgct 367  Q
    ||||||||||||||||| ||||||||| |  ||||| | ||||||||| ||||||| || ||||||    
T  5331318 aatgtagcttataaaaacaacttatagcaattagaagaacaatttaacgttattttctcttttgct 5331253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 5448583 - 5448550
Alignment:
Q  190 cttatttgagcttatctaccgacataagttttgt 223  Q
    ||||||||||||||||||| ||||||||||||||    
T  5448583 cttatttgagcttatctactgacataagttttgt 5448550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 367
Target Start/End: Original strand, 29520524 - 29520589
Alignment:
Q  302 aatgtagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatcctttgct 367  Q
    ||||||||||||||||| ||||||||| |  ||||| | ||||||||| ||||||| || ||||||    
T  29520524 aatgtagcttataaaaacaacttatagcaattagaagaacaatttaacgttattttctcttttgct 29520589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 360
Target Start/End: Complemental strand, 30443941 - 30443860
Alignment:
Q  279 cagcttatttttgtaatttttctaatgtagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatc 360  Q
    |||||||||||  ||| || || ||| ||| ||||||||| | ||||||| || || |||||||||||||||| ||||||||    
T  30443941 cagcttattttcataagttctccaatatagtttataaaaacagcttatagcatatacaaaagcaatttaacttcattttatc 30443860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 364
Target Start/End: Original strand, 35959478 - 35959563
Alignment:
Q  279 cagcttatttttgtaatttttctaatgtagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatccttt 364  Q
    |||||||||||   || || |||||| ||||||||| ||| |||||| || || || ||||  |||||||||||||||||||||||    
T  35959478 cagcttattttcaaaaattctctaatatagcttatagaaacaacttacagcatatacaaaaataatttaactttattttatccttt 35959563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 39980886 - 39980833
Alignment:
Q  172 agggtatgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||| ||||||||||| ||| |||||||||||||||   ||||||||||||||    
T  39980886 agggtctgtttggattggcttgtttgagcttatctactagcataagttttgtga 39980833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 47132467 - 47132397
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaa 250  Q
    ||||||||||| ||||||||||||||||||| | |  ||||||||||| ||  |||||||||| ||| |||||    
T  47132467 tgtttggattggcttatttgagcttatctactggc--aagttttgtgagactgttttggagaacttatgaaaa 47132397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 207
Target Start/End: Complemental strand, 51929892 - 51929863
Alignment:
Q  178 tgtttggattgacttatttgagcttatcta 207  Q
    ||||||||||||||||||||||||||||||    
T  51929892 tgtttggattgacttatttgagcttatcta 51929863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 207
Target Start/End: Complemental strand, 20669499 - 20669471
Alignment:
Q  179 gtttggattgacttatttgagcttatcta 207  Q
    |||||||||||||||||||||||||||||    
T  20669499 gtttggattgacttatttgagcttatcta 20669471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 21367816 - 21367772
Alignment:
Q  180 tttggattgacttatttgagcttatctaccgacataagttttgtg 224  Q
    ||||||||| |||||||||| |||||||||  |||||||||||||    
T  21367816 tttggattggcttatttgagattatctaccagcataagttttgtg 21367772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 34235012 - 34235056
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttg 222  Q
    |||||| ||||||||||| ||||||||||||  ||||||||||||    
T  34235012 tgtttgtattgacttattcgagcttatctactaacataagttttg 34235056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 42747701 - 42747777
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 254  Q
    ||||||| |||||||||||||| ||||||||   ||||||| |||||| ||  |||| ||||| ||| |||||||||    
T  42747701 tgtttggtttgacttatttgagtttatctacttccataagtattgtgagactgtttttgagaacttatgaaaacaac 42747777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 45432865 - 45432909
Alignment:
Q  171 aagggtatgtttggattgacttatttgagcttatctaccgacata 215  Q
    |||||| ||||||||||||||||||| | ||||||||| ||||||    
T  45432865 aagggtctgtttggattgacttattttaacttatctactgacata 45432909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 46778122 - 46778186
Alignment:
Q  190 cttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 254  Q
    ||||||||||||||| ||  | ||||| |||||||||||| ||| |||||| ||| |||||||||    
T  46778122 cttatttgagcttatttagtggcataaattttgtgaaaccgtttgggagaacttatgaaaacaac 46778186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 50644174 - 50644250
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 254  Q
    |||||||||||||||||||||||||||||||  ||||| ||||||||| ||  ||| |||||| ||| |||||||||    
T  50644174 tgtttggattgacttatttgagcttatctactaacatatgttttgtgagactgtttgggagaacttatgaaaacaac 50644250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 364
Target Start/End: Original strand, 14576695 - 14576760
Alignment:
Q  299 tctaatgtagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatccttt 364  Q
    |||||| ||||||||||||| || |||||| || || |||| ||||||||||||||||||||||||    
T  14576695 tctaatatagcttataaaaaaaaattatagcatatacaaaaacaatttaactttattttatccttt 14576760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 24334345 - 24334280
Alignment:
Q  179 gtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaattta 244  Q
    ||||||||||||||||||||| ||||| || |||||||||||||||| || ||||  |||||||||    
T  24334345 gtttggattgacttatttgagtttatcaacggacataagttttgtgagactatttgagagaattta 24334280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 39976130 - 39976179
Alignment:
Q  179 gtttggattgacttatttgagcttatctaccgacataagttttgtgaaac 228  Q
    ||||||| ||||||||||||| |||||||| |||||||||||||||||||    
T  39976130 gtttggactgacttatttgagattatctactgacataagttttgtgaaac 39976179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 38116002 - 38116058
Alignment:
Q  184 gattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaa 240  Q
    ||||||||||||||||||||||||| ||| |||||||||||| ||  ||||||||||    
T  38116002 gattgacttatttgagcttatctactgacgtaagttttgtgagacggttttggagaa 38116058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 217
Target Start/End: Complemental strand, 6292643 - 6292604
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataag 217  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  6292643 tgtttggattgacttatttgagcttatctactgacataag 6292604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 33204313 - 33204360
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||| ||| ||||||||||||||||||||| ||||||||||||||||    
T  33204313 tgtttagatcgacttatttgagcttatctactgacataagttttgtga 33204360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 252
Target Start/End: Complemental strand, 2295247 - 2295173
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 252  Q
    |||||| |||| ||||||||||||||||||| | |||||||||||||| ||  ||| |||||| ||| |||||||    
T  2295247 tgtttgaattggcttatttgagcttatctactggcataagttttgtgagactgtttgggagaacttatgaaaaca 2295173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 2295342 - 2295280
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaa 240  Q
    ||||||||||| ||||||||||||||||||| ||| |||||||| ||| || |||| ||||||    
T  2295342 tgtttggattggcttatttgagcttatctactgacttaagttttctgagactatttgggagaa 2295280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 14385712 - 14385774
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaa 240  Q
    |||| |||||| ||||||||||||||||||| | ||||||||| |||| || |||||||||||    
T  14385712 tgttcggattggcttatttgagcttatctactggcataagtttcgtgagactattttggagaa 14385774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 1432664 - 1432619
Alignment:
Q  180 tttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||||||| |||||||||||||||| |||||||||| ||||||||    
T  1432664 tttggattggcttatttgagcttatccaccgacataaattttgtga 1432619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 36872879 - 36872806
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaac 251  Q
    ||||||||||| ||||||| |||||| ||| | |||||||||||| || ||  |||||||||||||| ||||||    
T  36872879 tgtttggattggcttatttaagcttaactaacaacataagttttgcgagactgttttggagaatttatgaaaac 36872806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 41505825 - 41505784
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagtt 219  Q
    ||||||||||| ||||||||||||||||||| ||||||||||    
T  41505825 tgtttggattggcttatttgagcttatctactgacataagtt 41505784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 3233934 - 3234010
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 254  Q
    ||||||||||||||||||||||||||||||  | | |||||||||||| ||  ||  |||||| ||| |||||||||    
T  3233934 tgtttggattgacttatttgagcttatctagtgccgtaagttttgtgagactgttagggagaacttatgaaaacaac 3234010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 7217992 - 7218031
Alignment:
Q  177 atgtttggattgacttatttgagcttatctaccgacataa 216  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  7217992 atgtttggattgacttatttaagcttatctaccggcataa 7218031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 367
Target Start/End: Complemental strand, 13810145 - 13809958
Alignment:
Q  182 tggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac--atgacaattcgcaaaagnnnnnnnc 279  Q
    ||||||| |||||||| |||||||||| ||| |||||||||||| ||  |||| ||||| ||| ||| |||    |||||||||  ||||||            
T  13810145 tggattggcttatttgtgcttatctactgacgtaagttttgtgagactcttttagagaacttatgaatacagtttatgacaattttcaaaagtttttctt 13810046  T
Q  280 agcttatttttgtaatttttctaatgtagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatcctttgct 367  Q
    ||||||||||   || || |||||| ||| ||||||||| ||  ||||| || || |||| |||||||||||||||||||| ||||||    
T  13810045 agcttattttcacaagttctctaatatagtttataaaaacaatatatagcatatacaaaaacaatttaactttattttatcttttgct 13809958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 27146174 - 27146221
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 225  Q
    |||||||||||||| |||||||||||||||  | ||||||||||||||    
T  27146174 tgtttggattgactgatttgagcttatctattggcataagttttgtga 27146221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 252
Target Start/End: Original strand, 37617383 - 37617458
Alignment:
Q  177 atgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 252  Q
    ||||||||||||||||||||||| |||||||  | | |||||||||||| ||  |||  ||||||||| |||||||    
T  37617383 atgtttggattgacttatttgagtttatctattgccgtaagttttgtgagactgtttgcgagaatttatgaaaaca 37617458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 208
Target Start/End: Original strand, 3319865 - 3319895
Alignment:
Q  178 tgtttggattgacttatttgagcttatctac 208  Q
    |||||||||||||||||||||||||||||||    
T  3319865 tgtttggattgacttatttgagcttatctac 3319895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 5152032 - 5151990
Alignment:
Q  172 agggtatgtttggattgacttatttgagcttatctaccgacat 214  Q
    ||||||||||||||||||| ||||||||||||| ||| |||||    
T  5152032 agggtatgtttggattgacctatttgagcttatgtactgacat 5151990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 225
Target Start/End: Complemental strand, 7028440 - 7028406
Alignment:
Q  191 ttatttgagcttatctaccgacataagttttgtga 225  Q
    |||||||||||||||| ||||||||||||||||||    
T  7028440 ttatttgagcttatctgccgacataagttttgtga 7028406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 7069430 - 7069384
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtg 224  Q
    |||||||||||||||||||||||||||| ||  || |||||||||||    
T  7069430 tgtttggattgacttatttgagcttatcaactaacgtaagttttgtg 7069384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 15784465 - 15784423
Alignment:
Q  181 ttggattgacttatttgagcttatctaccgacataagttttgt 223  Q
    |||||| |||||||||||||||||||||  |||||||||||||    
T  15784465 ttggatcgacttatttgagcttatctactaacataagttttgt 15784423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 206
Target Start/End: Original strand, 5886910 - 5886939
Alignment:
Q  177 atgtttggattgacttatttgagcttatct 206  Q
    ||||||||||||||||||||||||||||||    
T  5886910 atgtttggattgacttatttgagcttatct 5886939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 7107448 - 7107493
Alignment:
Q  195 ttgagcttatctaccgacataagttttgtgaaaccattttggagaa 240  Q
    |||||||||||||| |||||||||||||||| || |||| ||||||    
T  7107448 ttgagcttatctactgacataagttttgtgatactatttgggagaa 7107493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 367
Target Start/End: Complemental strand, 28043659 - 28043590
Alignment:
Q  299 tctaatgtagcttataaaaagaacttataggatgta-gaaaagcaatttaactttattttatcctttgct 367  Q
    |||||| | |||| |||||||||||| ||| || || ||||||||| |||||||||||||| ||||||||    
T  28043659 tctaatatggcttttaaaaagaacttttagcatatacgaaaagcaacttaactttattttaccctttgct 28043590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 34303178 - 34303215
Alignment:
Q  180 tttggattgacttatttgagcttatctaccgacataag 217  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  34303178 tttgaattgacttgtttgagcttatctaccgacataag 34303215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 34952361 - 34952324
Alignment:
Q  170 taagggtatgtttggattgacttatttgagcttatcta 207  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  34952361 taagggtctgtttggattggcttatttgagcttatcta 34952324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 51929383 - 51929420
Alignment:
Q  180 tttggattgacttatttgagcttatctaccgacataag 217  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  51929383 tttggattgacttttttgagcttatctactgacataag 51929420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 473314 - 473242
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaa 250  Q
    ||||| ||||| ||||||||||| ||||||| | |||||||| ||||||||  ||| |||||| ||| |||||    
T  473314 tgtttagattggcttatttgagcctatctactggcataagttctgtgaaacattttgggagaacttatgaaaa 473242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 601195 - 601163
Alignment:
Q  174 ggtatgtttggattgacttatttgagcttatct 206  Q
    |||||||||||||||||||| ||||||||||||    
T  601195 ggtatgtttggattgacttacttgagcttatct 601163  T

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Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 3887543 - 3887575
Alignment:
Q  170 taagggtatgtttggattgacttatttgagctt 202  Q
    ||||||| |||||||||||||||||||||||||    
T  3887543 taagggtctgtttggattgacttatttgagctt 3887575  T

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Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 5157221 - 5157185
Alignment:
Q  180 tttggattgacttatttgagcttatctaccgacataa 216  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  5157221 tttggattgacttatttgaacttatctacggacataa 5157185  T

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Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 6102297 - 6102257
Alignment:
Q  185 attgacttatttgagcttatctaccgacataagttttgtga 225  Q
    ||||||||||||||| |||||||||| ||||| ||||||||    
T  6102297 attgacttatttgagtttatctaccggcataaattttgtga 6102257  T

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Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 10199330 - 10199366
Alignment:
Q  181 ttggattgacttatttgagcttatctaccgacataag 217  Q
    ||||||||||||||||||||||||||||  |||||||    
T  10199330 ttggattgacttatttgagcttatctactaacataag 10199366  T

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Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 24460320 - 24460356
Alignment:
Q  178 tgtttggattgacttatttgagcttatctaccgacat 214  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  24460320 tgtttggattgacttatttgaacttatctactgacat 24460356  T

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Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 367
Target Start/End: Complemental strand, 26678927 - 26678863
Alignment:
Q  303 atgtagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatcctttgct 367  Q
    |||||||||||||| | ||||||||| || || | || |||| ||||||||||||||| ||||||    
T  26678927 atgtagcttataaatacaacttatagcatttacataaacaatgtaactttattttatcttttgct 26678863  T

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Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 26866470 - 26866434
Alignment:
Q  172 agggtatgtttggattgacttatttgagcttatctac 208  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  26866470 agggtctgtttggattgacttatttcagcttatctac 26866434  T

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Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 29793619 - 29793655
Alignment:
Q  180 tttggattgacttatttgagcttatctaccgacataa 216  Q
    |||| |||||||||||||||||||||||| |||||||    
T  29793619 tttgtattgacttatttgagcttatctactgacataa 29793655  T

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Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 367
Target Start/End: Complemental strand, 33186286 - 33186226
Alignment:
Q  307 agcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatcctttgct 367  Q
    |||||||||||| ||||||||| || || || |  ||||||||||| ||||||||||||||    
T  33186286 agcttataaaaacaacttatagcatatacaagaaaaatttaactttcttttatcctttgct 33186226  T

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Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 359
Target Start/End: Original strand, 37517236 - 37517296
Alignment:
Q  299 tctaatgtagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttat 359  Q
    |||||| |||||||| |||| ||||||||  || || |||| |||||||||||||||||||    
T  37517236 tctaatatagcttattaaaataacttataatatatacaaaaacaatttaactttattttat 37517296  T

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Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 48748505 - 48748541
Alignment:
Q  169 ctaagggtatgtttggattgacttatttgagcttatc 205  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  48748505 ctaagagtatgtttgaattgacttatttgagcttatc 48748541  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 208
Target Start/End: Original strand, 21213 - 21247
Alignment:
Q  174 ggtatgtttggattgacttatttgagcttatctac 208  Q
    ||||||||||||||||||||| |||||||||||||    
T  21213 ggtatgtttggattgacttatctgagcttatctac 21247  T

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Target: scaffold0024; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 59032 - 58995
Alignment:
Q  170 taagggtatgtttggattgacttatttgagcttatcta 207  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  59032 taagggtatgtttggattgacttacatgagcttatcta 58995  T

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Target: scaffold0459 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 6704 - 6671
Alignment:
Q  171 aagggtatgtttggattgacttatttgagcttat 204  Q
    |||||| |||||||||||||||||||||||||||    
T  6704 aagggtttgtttggattgacttatttgagcttat 6671  T

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Target: scaffold0366 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 6702 - 6669
Alignment:
Q  171 aagggtatgtttggattgacttatttgagcttat 204  Q
    |||||| |||||||||||||||||||||||||||    
T  6702 aagggtttgtttggattgacttatttgagcttat 6669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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