View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9761_high_1 (Length: 564)
Name: NF9761_high_1
Description: NF9761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9761_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 259 - 548
Target Start/End: Original strand, 5115922 - 5116211
Alignment:
| Q |
259 |
ttcacaccaacattctcatgtaactccagtactgacctcatagtttttggatcatcctgaatgtattaagacaatatcaagtatcaataaatgtaaacaa |
358 |
Q |
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| T |
5115922 |
ttcaccccaacattctcatgtaactccaataccaacctcatagtttttggatcatcctgaatgtattgaaacaatatcaagtatcaataaatgtaaacaa |
5116021 |
T |
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| Q |
359 |
actaaaaattgaattatctctttataaaggcaattcaaatttctctagatctaaaactgagtatttaagagactaaatcctatagttagtatccactttg |
458 |
Q |
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| T |
5116022 |
actaaaaattgaattatctctttataaaggcaattgaaatttctctagatctgaaactgagtatttaagagactaaatcctatagttagtatccactttg |
5116121 |
T |
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| Q |
459 |
aaaatgtcataaatgtgtcacaaaacttactaaagaggtatctcttcttaaatacaaatcattaaattagttcataataattcaatggtc |
548 |
Q |
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| T |
5116122 |
aaaatgtcataaatgtgtcacaaaaattactaaagaggtatctcttcttaaatacaaatcattaaattagttaataataaatcaatggtc |
5116211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 61 - 230
Target Start/End: Original strand, 5115757 - 5115925
Alignment:
| Q |
61 |
tttaaactccaagtaattattacaatttaatacataagacattattaagttgactcaattttcaagtagaaagataaataggtcatagagtattggtgtt |
160 |
Q |
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| T |
5115757 |
tttaaactcaaagtaattattacaatttaatacataag-cattattaagttgactcaattttcaagtagaaagataaataggtcatagaggattggtgtt |
5115855 |
T |
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| Q |
161 |
tcaagcccaataagaggaacaagacatatcattttcttgataatgatggccctacaatatcatcaattca |
230 |
Q |
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| T |
5115856 |
tcaagcccaataacaggaacaagacatatcattttcttgacaatgatggccctacaatatcatcaattca |
5115925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 5111973 - 5112015
Alignment:
| Q |
1 |
agcaaaaaccccacaatcagtaataatacatttaaatttatca |
43 |
Q |
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| T |
5111973 |
agcaaaaaccccaaaatcagtaataatacatttaaatttatca |
5112015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 5115727 - 5115762
Alignment:
| Q |
1 |
agcaaaaaccccacaatcagtaataatacatttaaa |
36 |
Q |
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| T |
5115727 |
agcaaaaaccccacaatcagtaataatacatttaaa |
5115762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 9521087 - 9520999
Alignment:
| Q |
21 |
taataatacatttaaatttatcaacacaaccaac-aacatgtttaaactccaagtaattattacaatttaatacataagacattattaa |
108 |
Q |
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| T |
9521087 |
taataatacattcaaatttgttaaaacaacctagtaacatgtttaaacacaaagtaaatattacaacttaatacataagcaattattaa |
9520999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 40804337 - 40804391
Alignment:
| Q |
152 |
attggtgtttcaagcccaataagaggaacaagacatatcattttcttgataatga |
206 |
Q |
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| T |
40804337 |
attggtgtttcaagcctaataaagggaacaatacatatcaatttcttgacaatga |
40804391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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