View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9761_high_5 (Length: 229)
Name: NF9761_high_5
Description: NF9761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9761_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 46731120 - 46731337
Alignment:
| Q |
1 |
caatcaatctcatagcacctaaaaatatattaagaatgtcaaacattatcatatcatgacactacaattacaaaaatgcaattccaatttccaactacta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
46731120 |
caatcaatctcatagcacctaaaaatatattaagaatgtcaaacattatcatatcatgacactacaattacaaaaatgcaattccaatttccaa-----a |
46731214 |
T |
|
| Q |
101 |
ccattctaatttacctaggaaaacgcttggggtgcacatgcactcgcaaataagttcctggttcaacaaactgattcgcatcagttacacggaaagtttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46731215 |
ccattctaatttacctaggaaaacgcttggggtgcacatgcactcgcaaataagttcctggttcaacaaactgattcgcatcagttacacggaaagtttt |
46731314 |
T |
|
| Q |
201 |
ttgagcttctcttatagtttttc |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
46731315 |
ttgagcttctcttatagtttttc |
46731337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 112 - 223
Target Start/End: Original strand, 7927670 - 7927781
Alignment:
| Q |
112 |
tacctaggaaaacgcttggggtgcacatgcactcgcaaataagttcctggttcaacaaactgattcgcatcagttacacggaaagttttttgagcttctc |
211 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||| | |||||||||||||||| ||||| || ||||||| |
|
|
| T |
7927670 |
tacctaggaaaacgcttagggtgcacgtgcactcgcaaatatgttcctggttcaacaaattgatccacatcagttacacggaacgttttctgtgcttctc |
7927769 |
T |
|
| Q |
212 |
ttatagtttttc |
223 |
Q |
| |
|
|||||||||||| |
|
|
| T |
7927770 |
ttatagtttttc |
7927781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University