View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9761_low_2 (Length: 357)
Name: NF9761_low_2
Description: NF9761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9761_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 68 - 344
Target Start/End: Original strand, 34719579 - 34719855
Alignment:
| Q |
68 |
tttcagtttataaaaatatcatctcatttttattttaagtcctgtttactaaactttgaatagaaaccaacaaaaaaccgtttttactgaacattacaat |
167 |
Q |
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| T |
34719579 |
tttcagtttataaaaacatcatctcatttttattttaagtcctgtttactaaactttgaatagaaaccaacaaaaaaccgtttttactgaacattacaat |
34719678 |
T |
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| Q |
168 |
gtttgaaaacagaaatgatattgttattaaaacttctatcatgaatataacacgagaagagagagatagtaaacatagtcattagaacgaaaatttaggt |
267 |
Q |
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| T |
34719679 |
gtttgaaaacagaaatgatattgttattaaaacttctatcatgaatataacacgagaagagacagatagtaaacatagtcattacaacgaaaatttaggt |
34719778 |
T |
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| Q |
268 |
cctacaaatcagaaatcatgagatggaatctaccttgcctgtaaatttgttagatttaaactatttggggtgagaac |
344 |
Q |
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| T |
34719779 |
cctacaaatcagaaatcatgagatggaatctaccttgcctgtaaatttgttagatttaaactatttggggtgagaac |
34719855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 230 - 333
Target Start/End: Original strand, 34729251 - 34729354
Alignment:
| Q |
230 |
gagatagtaaacatagtcattagaacgaaaatttaggtcctacaaatcagaaatcatgagatggaatctaccttgcctgtaaatttgttagatttaaact |
329 |
Q |
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| T |
34729251 |
gagataataaacatagtcattacaacaaaaatttaggtcctataaataagaaatcatgagatggaatctagcttgcctataaatttattaggttgaaact |
34729350 |
T |
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| Q |
330 |
attt |
333 |
Q |
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|||| |
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| T |
34729351 |
attt |
34729354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 34719522 - 34719566
Alignment:
| Q |
1 |
ggtacagctagaattgaattgataagggtcattttgatttcagga |
45 |
Q |
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| T |
34719522 |
ggtacagctagaattgaattgataagggtcattttgatttcagga |
34719566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 316
Target Start/End: Original strand, 34725200 - 34725272
Alignment:
| Q |
243 |
tagtcattagaacgaaaatttaggtcctacaaatcagaaatcatgagatggaatctaccttgcctgtaaatttg |
316 |
Q |
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| T |
34725200 |
tagttattacaacgaaaatttaggtcctacaaataagaaatcgtgagat-gaatcttcgttgcctgtaagtttg |
34725272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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