View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9761_low_5 (Length: 242)
Name: NF9761_low_5
Description: NF9761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9761_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 25 - 229
Target Start/End: Complemental strand, 42470532 - 42470328
Alignment:
| Q |
25 |
ggaagttagcaaaatcaaaatgtatggtgtgtgtgaaatttcattatgaaaaataatggataactgtttactcactaacagatatgcttggtgaagaaga |
124 |
Q |
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| T |
42470532 |
ggaagttagcaaaaccaaaatgtatggtgtgtgtgaaatttcattatgaaaaataatggataactgtttactcactaacagatatgcttggtgaagaaga |
42470433 |
T |
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| Q |
125 |
atctgatggatcccttctgcttcaagttgctgaagataaggttgaggataacatctcatctaggtattgattttggatattcaaatgcatgcttatttgt |
224 |
Q |
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| T |
42470432 |
atctgatggatcccttctgcttcaagttgctgaagataaggttgaggataacatctcatctaggtattgattttggatattcaaatgcatgcttatttgt |
42470333 |
T |
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| Q |
225 |
cttct |
229 |
Q |
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||||| |
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| T |
42470332 |
cttct |
42470328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 36 - 217
Target Start/End: Complemental strand, 42477766 - 42477585
Alignment:
| Q |
36 |
aaatcaaaatgtatggtgtgtgtgaaatttcattatgaaaaataatggataactgtttactcactaacagatatgcttggtgaagaagaatctgatggat |
135 |
Q |
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| T |
42477766 |
aaatcaaaatgtatggtgtgtgtgaaatttcattactaaaaataaagggtaactgtttactcactagcagaattacttggcgatgaagaatctgatggat |
42477667 |
T |
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| Q |
136 |
cccttctgcttcaagttgctgaagataaggttgaggataacatctcatctaggtattgattttggatattcaaatgcatgct |
217 |
Q |
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| T |
42477666 |
accttccgcttcaagttgctgaatatctgattgaggatgacatctcatctaggtattgattttggatattcagatgcatgct |
42477585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 211
Target Start/End: Complemental strand, 42491671 - 42491551
Alignment:
| Q |
91 |
tttactcactaacagatatgcttggtgaagaagaatctgatggatcccttctgcttcaagttgctgaagataaggttgaggataacatctcatctaggta |
190 |
Q |
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|||||||||||||||| | ||||||||||||||| |||||| |||||||| |||| ||||| ||||||||| |||||| ||| |||||||||| ||||| |
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| T |
42491671 |
tttactcactaacagagctccttggtgaagaagaacctgatgtatcccttccgcttgaagtttctgaagatatggttgaagatgacatctcatcgaggta |
42491572 |
T |
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| Q |
191 |
ttgattttggatattcaaatg |
211 |
Q |
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| T |
42491571 |
cttagtttggatattcaaatg |
42491551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 212
Target Start/End: Complemental strand, 42465116 - 42464995
Alignment:
| Q |
91 |
tttactcactaacagatatgcttggtgaagaagaatctgatggatcccttctgcttcaagttgctgaagataaggttgaggataacatctcatctaggta |
190 |
Q |
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|||||||||| ||||| |||||| ||||||||| |||||||| | ||| ||||||||||||||| |||| |||||||||| ||||||||| |||||| |
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| T |
42465116 |
tttactcactgacagagttgcttgacgaagaagaaactgatggacctgttccgcttcaagttgctgatgatatggttgaggatgacatctcatttaggta |
42465017 |
T |
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| Q |
191 |
ttgattttggatattcaaatgc |
212 |
Q |
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|||||||||||| |||| |||| |
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| T |
42465016 |
ttgattttggattttcagatgc |
42464995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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