View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9762_high_4 (Length: 327)
Name: NF9762_high_4
Description: NF9762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9762_high_4 |
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| [»] scaffold0736 (2 HSPs) |
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Alignment Details
Target: scaffold0736 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: scaffold0736
Description:
Target: scaffold0736; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 173 - 314
Target Start/End: Complemental strand, 7081 - 6940
Alignment:
| Q |
173 |
ctaatgtgaaacaaatattctgaaatctttaatattatcttaagaggaaataatgagctctaaaaagtttaaaacaattccatcatgcaagtaatttttt |
272 |
Q |
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| T |
7081 |
ctaatgtgaaacaaatattctgaaatctttaatattatcttaagaggaaataatgagctctaaaaagtttaaaacaattccatcatgcaagtaatttttt |
6982 |
T |
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| Q |
273 |
aatggggcacctcaacaattcatattaatctatcattcccct |
314 |
Q |
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| T |
6981 |
aatggggcacctcaacaattcatattaatctatcattcccct |
6940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0736; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 7225 - 7134
Alignment:
| Q |
29 |
ttttcaaacaccgacccatgtagttcatgaactgttgtcatttcataaagcatgaagaagacttggcattaagattttccaattgctcaata |
120 |
Q |
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| T |
7225 |
ttttcaaacaccgacccatgtagttcatgaactgttgtcatttcataaagcatgaagaagacttggcattaagattttccaattgctcaata |
7134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 174 - 314
Target Start/End: Complemental strand, 45482213 - 45482073
Alignment:
| Q |
174 |
taatgtgaaacaaatattctgaaatctttaatattatcttaagaggaaataatgagctctaaaaagtttaaaacaattccatcatgcaagtaatttttta |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
45482213 |
taatgtgaaacaaatattctgaaatctttaatattatcttaagaggaaataatgagctctaaaaaatttaaaacaattccatcatgcaagtcatttttta |
45482114 |
T |
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| Q |
274 |
atggggcacctcaacaattcatattaatctatcattcccct |
314 |
Q |
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| T |
45482113 |
atggggcacctcaacaattcttattaatctatcattcccct |
45482073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 45482372 - 45482276
Alignment:
| Q |
20 |
actgggtcattttcaaacaccgacccatgtagttcatgaactgttgtcatttcataaagcatgaagaagacttggcattaagattttccaattgctc |
116 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45482372 |
actgggtcattttcaaacaccgatccatgtagttcatgaactgttgtcatttcataaagcatgaagaagacttggcattaagattttccaattgctc |
45482276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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