View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9762_high_5 (Length: 290)
Name: NF9762_high_5
Description: NF9762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9762_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 40235415 - 40235148
Alignment:
| Q |
18 |
aaagtagatctcagctctagtaatccatcctacatgatcgtctccttcaaacaccggcaacttaaccttctttctggaaagtcgcgattcctgaaattgg |
117 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40235415 |
aaagtagatctcagctctagtaatccatcctacaggatcgtctccttcaaacaccggcaacttaaccttctttccggaaagtcgcgattcctgaaattgg |
40235316 |
T |
|
| Q |
118 |
ttggcggaagattcactcgtctgagtaaactccggtgatggtcgcttctctagctgtttgcttaattcactcaacacagcgctctgttgttgcattgtaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40235315 |
ttggcggaagattcactcgtctgagtaaactccggtgatggtcgcttctctagctgtttgcttaattcactcaacacagcgctctgttgttgcattgtaa |
40235216 |
T |
|
| Q |
218 |
cactctgttgttgcatctgttgcgagagtaccaacaacgctgacttcatctcacccatctctgcttct |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40235215 |
cactctgttgttgcatctgttgcgagagtaccaacaacgctgacttcatctcacccatctctgcttct |
40235148 |
T |
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Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 46440165 - 46440432
Alignment:
| Q |
18 |
aaagtagatctcagctctagtaatccatcctacatgatcgtctccttcaaacaccggcaacttaaccttctttctggaaagtcgcgattcctgaaattgg |
117 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
46440165 |
aaagtagatctcagctctagtaatccatcctacaggatcgtctccttcaaacaccggcaacttaaccttctttccggaaagtcgcgattcctgaaattgg |
46440264 |
T |
|
| Q |
118 |
ttggcggaagattcactcgtctgagtaaactccggtgatggtcgcttctctagctgtttgcttaattcactcaacacagcgctctgttgttgcattgtaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46440265 |
ttggcggaagattcactcgtctgagtaaactccggtgatggtcgcttctctagctgtttgcttaattcactcaacacagcgctctgttgttgcattgtaa |
46440364 |
T |
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| Q |
218 |
cactctgttgttgcatctgttgcgagagtaccaacaacgctgacttcatctcacccatctctgcttct |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46440365 |
cactctgttgttgcatctgttgcgagagtaccaacaacgctgacttcatctcacccatctctgcttct |
46440432 |
T |
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