View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9762_high_6 (Length: 280)

Name: NF9762_high_6
Description: NF9762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9762_high_6
NF9762_high_6
[»] chr5 (1 HSPs)
chr5 (18-267)||(42159951-42160200)
[»] chr1 (1 HSPs)
chr1 (79-152)||(50229996-50230069)
[»] chr4 (4 HSPs)
chr4 (77-153)||(28232814-28232889)
chr4 (77-136)||(46090026-46090085)
chr4 (103-139)||(9504564-9504600)
chr4 (77-153)||(11271728-11271803)
[»] chr3 (1 HSPs)
chr3 (96-153)||(38692794-38692851)


Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 42159951 - 42160200
Alignment:
Q  18 aataacgcgatacataatttgttgtgtttgatttttgagtgcttttagtttgatgtaatatgtttggaattacagtaagtttgacaaaatcatagtggca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42159951 aataacgcgatacataatttgttgtgtttgatttttgagtgcttttagtttgatgtaatatgtttggaattacagtaagtttgacaaaatcatagtggca 42160050  T
Q  118 ctgtgattttgtggaagctccatggtgtagtttttgattgatttaaccacgaatttaaacatgcagcaagtaaattgcagttaagttctgatgctggtta 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42160051 ctgtgattttgtggaagctccatggtgtagtttttgattgatttaaccacgaatttaaacatgcagtaagtaaattgcagttaagttctgatgctggtta 42160150  T
Q  218 gagcatggcatttgttcatttgtatttccgttttgattattttacgttct 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42160151 gagcatggcatttgttcatttgtatttccgttttgattattttacgttct 42160200  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 50230069 - 50229996
Alignment:
Q  79 gtttggaattacagtaagtttgacaaaatcatagtggcactgtgattttgtggaagctccatggtgtagttttt 152  Q
    |||| |||| ||||||| ||||||||||||||| ||||||| ||||||||| |||||| ||  |||||||||||    
T  50230069 gtttagaatcacagtaaatttgacaaaatcatactggcactatgattttgttgaagctacaaagtgtagttttt 50229996  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 28232889 - 28232814
Alignment:
Q  77 atgtttggaattacagtaagtttgacaaaatcatagtggcactgtgattttgtggaagctccatggtgtagtttttg 153  Q
    |||||||||||||| || |||||||||||||||||||||   ||||||||| |||||||||||  |||||| |||||    
T  28232889 atgtttggaattaccgtgagtttgacaaaatcatagtgg-gttgtgattttatggaagctccaaagtgtagcttttg 28232814  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 136
Target Start/End: Original strand, 46090026 - 46090085
Alignment:
Q  77 atgtttggaattacagtaagtttgacaaaatcatagtggcactgtgattttgtggaagct 136  Q
    ||||||||||| || |||| ||| ||||||||||||| |||| |||||||||| ||||||    
T  46090026 atgtttggaatcacggtaaatttaacaaaatcatagtagcaccgtgattttgttgaagct 46090085  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 9504564 - 9504600
Alignment:
Q  103 aaaatcatagtggcactgtgattttgtggaagctcca 139  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  9504564 aaaatcatagtggcattgtgattttgttgaagctcca 9504600  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 11271728 - 11271803
Alignment:
Q  77 atgtttggaattacagtaagtttgacaaaatcatagtggcactgtgattttgtggaagctccatggtgtagtttttg 153  Q
    ||||||||||| || || |||||||||||||||| ||| ||| |||||||||   ||||||||  ||||||||||||    
T  11271728 atgtttggaat-acggtgagtttgacaaaatcatggtgtcacagtgattttgataaagctccaaagtgtagtttttg 11271803  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 153
Target Start/End: Complemental strand, 38692851 - 38692794
Alignment:
Q  96 gtttgacaaaatcatagtggcactgtgattttgtggaagctccatggtgtagtttttg 153  Q
    ||||||||||| ||  |||||||||||||||||| |||||||||  ||||||||||||    
T  38692851 gtttgacaaaaccacggtggcactgtgattttgttgaagctccaaagtgtagtttttg 38692794  T

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