View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9762_low_1 (Length: 653)
Name: NF9762_low_1
Description: NF9762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9762_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 23 - 637
Target Start/End: Complemental strand, 40750578 - 40749969
Alignment:
| Q |
23 |
tatctattcacatgcagttccaaaaatatcaattaatttatagtcaacacttaattaaggactaattaattttcattgatgcacccagcattgaattgat |
122 |
Q |
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| T |
40750578 |
tatctattcacatgcagttccaaaaatatcaatta-----tagtcaacacttaattaaggactaattaattttcattgatgcacccagcattgaattgat |
40750484 |
T |
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| Q |
123 |
ttaaactcatcatcggtgaatttatggaagcaaactttgcaagctcttgaggtagaaattgatggttactcactccaagaaaatctctaaacccactaga |
222 |
Q |
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| T |
40750483 |
ttaaactcatcatcgttgaatttatggaagcaaactttgcaagctcttgaggtagaaattgatggttactcactccaagaaaatctctaaacccactaga |
40750384 |
T |
|
| Q |
223 |
attaccaaccatagttgcacttctactactacttggatcaaaattctcatgctgcttcattttctgattaatgaccatattaacctcatcatggtttttg |
322 |
Q |
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| T |
40750383 |
attaccaaccatagttgcacttctactactacttggatcaaaattctcatgctgcttcattttctgattaatgaccatattaacctcatcatggtttttg |
40750284 |
T |
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| Q |
323 |
tttaaactcgttgtttgtgtagaggatgaactcattacaccaaaacttccactaaaaatggaaggattagtactgcttcttgttgaacctatttgagctg |
422 |
Q |
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| T |
40750283 |
tttaaactcgttgtttgtgtagaggatgaactcattacaccaaaacttccactaaatatggaaggattagtactgcttcttgttgaacctatttgagctg |
40750184 |
T |
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| Q |
423 |
ctttctgaagaagtgcagtagctgacattggagtattagtttgagccatttgtataacatcggaaaaacctgatgaaacatgatcaagtgaatatgaatg |
522 |
Q |
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| T |
40750183 |
ctttctgaagaagtgcagtagctgacattggagtattagtttgagccatttgtataacatcggaaaaacctgatgaaacatgatcaagtgaatatgaatg |
40750084 |
T |
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| Q |
523 |
atgattaatctgttgattttcttggttcaaccacagtgacaagtttggtctttgctcatgatgaaatcctgcatgtggactaaactgttgaagattttga |
622 |
Q |
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| T |
40750083 |
atgattaatctgttgattttcttggttcaaccacagtgacaaatttggtctttgctcatgatgaaatcctgcatgtggactaaattgttgaatattttga |
40749984 |
T |
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| Q |
623 |
agtccttgagatgat |
637 |
Q |
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| T |
40749983 |
agtccttgagatgat |
40749969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 390 - 453
Target Start/End: Original strand, 28495290 - 28495353
Alignment:
| Q |
390 |
tagtactgcttcttgttgaacctatttgagctgctttctgaagaagtgcagtagctgacattgg |
453 |
Q |
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| T |
28495290 |
tagtattgcttctagttgaacccatttgagctgctttttgcagaagagcagtagctgacattgg |
28495353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 404 - 452
Target Start/End: Original strand, 50785480 - 50785528
Alignment:
| Q |
404 |
gttgaacctatttgagctgctttctgaagaagtgcagtagctgacattg |
452 |
Q |
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|||| ||| |||||||| |||||||||||||||||||| |||||||||| |
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| T |
50785480 |
gttgcacccatttgagcagctttctgaagaagtgcagttgctgacattg |
50785528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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