View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9762_low_10 (Length: 263)
Name: NF9762_low_10
Description: NF9762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9762_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 45524571 - 45524812
Alignment:
| Q |
1 |
agacaaagaaggttggttgtatacaggtgatattgggtatattgatgaagatgatgagttattcattgttgatagattgaaggaattaatcaaatacaaa |
100 |
Q |
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| T |
45524571 |
agacaaagaaggttggttgtatacaggtgatattgggtatattgatgaagatgatgagttattcattgttgatagattgaaggaattaatcaaatacaaa |
45524670 |
T |
|
| Q |
101 |
ggatttcaagttgctccagctgaacttgaagctcttcttctctctcatcccaaaatttctgatgctgctgttgtcccgtaagtctagtccttttcttata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45524671 |
ggatttcaagttgctccagctgaacttgaagctcttcttctgtctcatcccaaaatttctgatgctgctgttgtcccgtaagtctagtccttttcttata |
45524770 |
T |
|
| Q |
201 |
tatgctatgaaatttccattcatattattaattcaattcaat |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
45524771 |
tatgctatgaaatttccattcatattattaattcaattcaat |
45524812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 352064 - 352246
Alignment:
| Q |
1 |
agacaaagaaggttggttgtatacaggtgatattgggtatattgatgaagatgatgagttattcattgttgatagattgaaggaattaatcaaatacaaa |
100 |
Q |
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|||||| |||||||||||| |||| ||||| ||||| | ||||| || ||||||||||| ||||| ||||||||| | || ||||| || ||||||||| |
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| T |
352064 |
agacaaggaaggttggttgcatactggtgacattggattcattgacgatgatgatgagttgttcatagttgatagacttaaagaattgattaaatacaaa |
352163 |
T |
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| Q |
101 |
ggatttcaagttgctccagctgaacttgaagctcttcttctctctcatcccaaaatttctgatgctgctgttgtcccgtaagt |
183 |
Q |
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| T |
352164 |
ggttttcaagttgctccagctgaacttgaagccattattctctcacatcctcaaatttccgatgtcgctgtcgtcccgtaagt |
352246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 183
Target Start/End: Original strand, 53458456 - 53458577
Alignment:
| Q |
62 |
ttcattgttgatagattgaaggaattaatcaaatacaaaggatttcaagttgctccagctgaacttgaagctcttcttctctctcatcccaaaatttctg |
161 |
Q |
| |
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|||||||||||| |||| |||||||| || ||||||||||||| ||||| ||||| ||||| || ||||| | | | ||||||| || ||||||| |
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| T |
53458456 |
ttcattgttgatcgattaaaggaattgattaaatacaaaggataccaagtagctcctgctgagctcgaagcattgttgattgctcatccaaacatttctg |
53458555 |
T |
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| Q |
162 |
atgctgctgttgtcccgtaagt |
183 |
Q |
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|||||||||| || |||||||| |
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| T |
53458556 |
atgctgctgtcgtaccgtaagt |
53458577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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