View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9762_low_13 (Length: 260)

Name: NF9762_low_13
Description: NF9762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9762_low_13
NF9762_low_13
[»] chr7 (11 HSPs)
chr7 (1-243)||(22696635-22696877)
chr7 (39-175)||(19835105-19835238)
chr7 (106-241)||(13726070-13726205)
chr7 (118-195)||(48825895-48825972)
chr7 (106-171)||(2898177-2898242)
chr7 (127-178)||(19423676-19423727)
chr7 (124-195)||(24237450-24237521)
chr7 (124-191)||(37179967-37180034)
chr7 (116-178)||(21534164-21534226)
chr7 (120-170)||(46661261-46661311)
chr7 (129-241)||(29453041-29453153)
[»] chr1 (8 HSPs)
chr1 (106-195)||(25711091-25711180)
chr1 (119-177)||(19635602-19635660)
chr1 (119-171)||(50740760-50740812)
chr1 (124-194)||(36496810-36496880)
chr1 (118-177)||(32226436-32226495)
chr1 (118-195)||(25892665-25892742)
chr1 (118-171)||(31460637-31460690)
chr1 (118-170)||(37491228-37491280)
[»] chr6 (3 HSPs)
chr6 (119-195)||(15584963-15585039)
chr6 (119-192)||(31462750-31462823)
chr6 (118-195)||(2252423-2252500)
[»] chr5 (7 HSPs)
chr5 (39-177)||(8117163-8117309)
chr5 (119-178)||(13094318-13094377)
chr5 (125-178)||(13024140-13024193)
chr5 (120-171)||(30874926-30874977)
chr5 (1-78)||(30874834-30874911)
chr5 (119-171)||(28461452-28461504)
chr5 (118-171)||(1374462-1374515)
[»] chr8 (6 HSPs)
chr8 (39-190)||(25029343-25029501)
chr8 (106-170)||(13341350-13341414)
chr8 (106-168)||(27708212-27708274)
chr8 (119-176)||(28852613-28852670)
chr8 (118-177)||(14358496-14358555)
chr8 (118-171)||(22576347-22576400)
[»] chr4 (9 HSPs)
chr4 (106-190)||(3124935-3125019)
chr4 (119-171)||(51850712-51850764)
chr4 (119-178)||(52643125-52643184)
chr4 (121-195)||(11389142-11389216)
chr4 (118-195)||(12049549-12049626)
chr4 (118-195)||(49600085-49600162)
chr4 (118-188)||(54856752-54856822)
chr4 (118-171)||(36557024-36557077)
chr4 (126-171)||(43437819-43437864)
[»] chr3 (5 HSPs)
chr3 (119-171)||(30485151-30485203)
chr3 (118-191)||(3987279-3987352)
chr3 (118-191)||(41653752-41653824)
chr3 (118-191)||(41653897-41653969)
chr3 (119-171)||(31203325-31203377)
[»] scaffold0380 (1 HSPs)
scaffold0380 (119-171)||(10994-11046)
[»] chr2 (5 HSPs)
chr2 (118-191)||(35819004-35819076)
chr2 (126-195)||(45710089-45710158)
chr2 (106-178)||(12733076-12733147)
chr2 (118-178)||(17316378-17316438)
chr2 (118-191)||(7154970-7155043)
[»] scaffold0172 (1 HSPs)
scaffold0172 (119-170)||(31034-31085)


Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 22696635 - 22696877
Alignment:
Q  1 aagagataagatatccccatgttgtgttttccagttgaaagatagaagactgtgttccgcgacgtaggtgagaagagataaaaatttgaaaagttttagg 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||    
T  22696635 aagagagaagatatccccatgttgtgttttccagttgaaagatagaagactgtgtttcgcgacgcaggtgagaagagataaaaatttgaaaagtgttagg 22696734  T
Q  101 gtctacaaaattcccttcaaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgctgcgta 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||    
T  22696735 gtctacaaaattcccttcaaaaggttttaaaaatagggtaaatttggaaatttcctactaaaatcaaatagcggctgacgcggccgctatccgctacgta 22696834  T
Q  201 cctctctaccgcaatagcagctgaagcggaagctatttgatcc 243  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  22696835 cctctctaccgctatagcagctgaagcggaagctatttgatcc 22696877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 175
Target Start/End: Complemental strand, 19835238 - 19835105
Alignment:
Q  39 aagatagaagactgtgttccgcgacgtaggtgagaagagataaaaatttgaaaagttttagggtctacaaaattcccttcaaaaggttttaaaaataggg 138  Q
    ||||||||||| |||||| |||| |  |||||| |||||| ||||| ||||||| | | ||||| ||| ||||  |||  |||||||||||||||||| |    
T  19835238 aagatagaagagtgtgtttcgcggcacaggtgaaaagagagaaaaagttgaaaaatgtcagggtttacgaaat--cctcaaaaaggttttaaaaatagag 19835141  T
Q  139 tcaatttggaaatttcctactaaaatcaaatagtggc 175  Q
    |||||||||||||||||||| ||||||||||||||||    
T  19835140 tcaatttggaaatttcctac-aaaatcaaatagtggc 19835105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 106 - 241
Target Start/End: Complemental strand, 13726205 - 13726070
Alignment:
Q  106 caaaattcccttcaaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgctgcgtacctct 205  Q
    |||||| ||||  |||||||||| ||||||||||||||||| ||||||||||||||||||||||||   ||||  |||| |||| ||||| || ||| ||    
T  13726205 caaaatgccctaaaaaaggtttttaaaatagggtcaatttgaaaatttcctactaaaatcaaatagcatctgaagcggctgctaaccgctccgcaccgct 13726106  T
Q  206 ctaccgcaatagcagctgaagcggaagctatttgat 241  Q
     |  ||| ||||||||||||||||  ||||||||||    
T  13726105 atgtcgctatagcagctgaagcggccgctatttgat 13726070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 195
Target Start/End: Complemental strand, 48825972 - 48825895
Alignment:
Q  118 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgct 195  Q
    ||||| ||||||||||||||||||||||| |||||| | ||||||||||||||| ||||||  |||| ||||||||||    
T  48825972 caaaatgttttaaaaatagggtcaatttgaaaattttcaactaaaatcaaatagcggctgaagcggctgctatccgct 48825895  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 2898242 - 2898177
Alignment:
Q  106 caaaattcccttcaaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 171  Q
    |||||| ||||  ||||||||||| ||||||||||||||| ||||||| |||||||||||||||||    
T  2898242 caaaatgccctcaaaaaggttttacaaatagggtcaatttagaaatttgctactaaaatcaaatag 2898177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 178
Target Start/End: Complemental strand, 19423727 - 19423676
Alignment:
Q  127 ttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctga 178  Q
    ||||||||||||||||| || |||||||||||||||||||||||| ||||||    
T  19423727 ttaaaaatagggtcaatatgaaaatttcctactaaaatcaaatagcggctga 19423676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 195
Target Start/End: Original strand, 24237450 - 24237521
Alignment:
Q  124 gttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgct 195  Q
    |||| |||||||  ||||||||| |||||| | ||||||||||||||| ||||||  |||||| ||||||||    
T  24237450 gtttgaaaaataatgtcaatttgaaaattttcaactaaaatcaaataggggctgaagcggccgttatccgct 24237521  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 37180034 - 37179967
Alignment:
Q  124 gttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatc 191  Q
    ||||| ||||||| ||||||||| |||||| | |||||||||||||||  |||||  |||||||||||    
T  37180034 gtttttaaaatagtgtcaatttgaaaattttcaactaaaatcaaatagcagctgaagcggccgctatc 37179967  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 21534226 - 21534164
Alignment:
Q  116 ttcaaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctga 178  Q
    |||||||  ||||||||||| ||||||||||| || || | ||||||||||||||| ||||||    
T  21534226 ttcaaaatattttaaaaatatggtcaatttggtaaatttcaactaaaatcaaatagcggctga 21534164  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 46661261 - 46661311
Alignment:
Q  120 aaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaata 170  Q
    |||||||||||||||| | |||||||| |||||| ||| ||||||||||||    
T  46661261 aaaggttttaaaaataagatcaatttgaaaattttctattaaaatcaaata 46661311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 241
Target Start/End: Original strand, 29453041 - 29453153
Alignment:
Q  129 aaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgctgcgtacctctctaccgcaatagcagctgaagcg 228  Q
    ||||| ||| |||||||| |||||||||| ||||||||||||| || |||  ||||||| || |||| |  | | || | |||| |||||||||||| ||    
T  29453041 aaaaaaaggatcaatttgaaaatttcctattaaaatcaaatagcggttgaagcggccgccatacgctccacatcgctatgccgctatagcagctgaaacg 29453140  T
Q  229 gaagctatttgat 241  Q
    || ||| ||||||    
T  29453141 gacgctgtttgat 29453153  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 106 - 195
Target Start/End: Original strand, 25711091 - 25711180
Alignment:
Q  106 caaaattcccttcaaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgct 195  Q
    |||||| ||||  ||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||  |||||||||||||||    
T  25711091 caaaataccctaaaaaaggttttaaaaatagggtcaatttcgaaatttcctaataaaatcaaattgtggctgaagcggccgctatccgct 25711180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 19635660 - 19635602
Alignment:
Q  119 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctg 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19635660 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagcggctg 19635602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 50740812 - 50740760
Alignment:
Q  119 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 171  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  50740812 aaaaggttttaaaaataggatcaatttggaaatttcctactaaaatcaaatag 50740760  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 36496880 - 36496810
Alignment:
Q  124 gttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgc 194  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||  ||||||  ||||||||||||||    
T  36496880 gttttaaaaatagggttaatttagaaatttcctactaaaatcaaataccggctgaagcggccgctatccgc 36496810  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 32226436 - 32226495
Alignment:
Q  118 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctg 177  Q
    ||||| |||| ||||||||||||||||||||||||| | ||||||||||||||| |||||    
T  32226436 caaaatgtttcaaaaatagggtcaatttggaaattttcaactaaaatcaaatagcggctg 32226495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 195
Target Start/End: Complemental strand, 25892742 - 25892665
Alignment:
Q  118 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgct 195  Q
    ||||| ||||||||||||| ||||| ||| | |||| | ||||||||||| ||| || |||  |||||||||||||||    
T  25892742 caaaatgttttaaaaatagtgtcaaattgaatattttcaactaaaatcaattagaggttgaagcggccgctatccgct 25892665  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 31460690 - 31460637
Alignment:
Q  118 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 171  Q
    |||||||||||||||||| | | | ||||||||||| | |||||||||||||||    
T  31460690 caaaaggttttaaaaataagtttagtttggaaattttcaactaaaatcaaatag 31460637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 37491228 - 37491280
Alignment:
Q  118 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaata 170  Q
    ||||| |||| |||||||||||||||||| |||| | | ||||||||||||||    
T  37491228 caaaatgtttgaaaaatagggtcaatttgaaaatattcaactaaaatcaaata 37491280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 15584963 - 15585039
Alignment:
Q  119 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgct 195  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||| | ||||||  |||||||||||||||    
T  15584963 aaaagtttttaaaaatagggtcaatttgaaaatttcctactaaaatcaaatggcggctgaagcggccgctatccgct 15585039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 31462750 - 31462823
Alignment:
Q  119 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatcc 192  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||| ||  |||||  ||||||||||||    
T  31462750 aaaaggttttaaaaataggctcaatttagaaatttcctactaaaatcaaacagctgctgaagcggccgctatcc 31462823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 195
Target Start/End: Original strand, 2252423 - 2252500
Alignment:
Q  118 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgct 195  Q
    ||||| |||||||||||| ||||||||||||||||| | |||||||||||| ||  |||||  |||||||||||||||    
T  2252423 caaaatgttttaaaaatatggtcaatttggaaattttcaactaaaatcaaacagcagctgaagcggccgctatccgct 2252500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 39 - 177
Target Start/End: Complemental strand, 8117309 - 8117163
Alignment:
Q  39 aagatagaagactgtgttccgcgacgtaggtgagaagagataaaaatttgaaaagttttagggtctac---------aaaattcccttcaaaaggtttta 129  Q
    ||||||||||| |||||| |||| |  ||||||||||||| ||||| ||||||| | ||||||| |||         ||||| ||||  |||||||||||    
T  8117309 aagatagaagagtgtgtttcgcggcacaggtgagaagagagaaaaagttgaaaaatgttagggtttacgaaatcctcaaaatgccctaaaaaaggtttta 8117210  T
Q  130 aaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctg 177  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||    
T  8117209 aaaatagggtcaatttggaaatttcctactaaaat-aaatagcggctg 8117163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 178
Target Start/End: Original strand, 13094318 - 13094377
Alignment:
Q  119 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctga 178  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||    
T  13094318 aaaaggttttaaaaatatggtcaatttggaaatttcctagtaaaatcaaatagtcgctga 13094377  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 13024140 - 13024193
Alignment:
Q  125 ttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctga 178  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||| |||||    
T  13024140 ttttaaaaatatggtcaatttggaaatttcctagtaaaatcaaatagtcgctga 13024193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 30874926 - 30874977
Alignment:
Q  120 aaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 171  Q
    |||||||||||||||| ||| |||||  ||||||||||||||||||||||||    
T  30874926 aaaggttttaaaaatatggtgaatttaaaaatttcctactaaaatcaaatag 30874977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 30874834 - 30874911
Alignment:
Q  1 aagagataagatatccccatgttgtgttttccagttgaaagatagaagactgtgttccgcgacgtaggtgagaagaga 78  Q
    |||||| |||||||||||| || |||||||||||  | ||||||||||| ||||||  ||| | ||||||||||||||    
T  30874834 aagagagaagatatccccaggtcgtgttttccagccggaagatagaagagtgtgttttgcggcataggtgagaagaga 30874911  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 28461452 - 28461504
Alignment:
Q  119 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 171  Q
    |||| |||||||||| || ||||||||  ||||||||||||||||||||||||    
T  28461452 aaaaagttttaaaaacagagtcaatttaaaaatttcctactaaaatcaaatag 28461504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 1374515 - 1374462
Alignment:
Q  118 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 171  Q
    ||||| ||||| ||||||| ||||||||| |||||| | |||||||||||||||    
T  1374515 caaaatgtttttaaaatagtgtcaatttgaaaattttcaactaaaatcaaatag 1374462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 190
Target Start/End: Complemental strand, 25029501 - 25029343
Alignment:
Q  39 aagatagaagactgtgttccgcgacgtaggtgagaagagataaaaatttgaaaagttttagggtctacaaaattc--------ccttcaaaaggttttaa 130  Q
    ||||||||||| |||||| |||| |  ||||||||||||| ||||| ||||||| | ||||||| |||||||| |        || | ||||||||||||    
T  25029501 aagatagaagagtgtgtttcgcggctcaggtgagaagagagaaaaagttgaaaaatgttagggtttacaaaatcctcaaaatgccctaaaaaggttttaa 25029402  T
Q  131 aaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctat 190  Q
    |||||||||||||||||||| ||||| || ||||||||||| ||||||  ||||||||||    
T  25029401 aaatagggtcaatttggaaa-ttccttctgaaatcaaatagcggctgaagcggccgctat 25029343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 13341414 - 13341350
Alignment:
Q  106 caaaattcccttcaaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaata 170  Q
    |||||| ||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13341414 caaaatgccctcaaaaaggttttcaaaatagggtcaatttggaaatttcctactaaaatcaaata 13341350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 27708212 - 27708274
Alignment:
Q  106 caaaattcccttcaaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaa 168  Q
    |||||| ||||  ||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  27708212 caaaatgccctaaaaaaggttttaaaaatagggtcaatttggaaatttcggactaaaatcaaa 27708274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 28852670 - 28852613
Alignment:
Q  119 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggct 176  Q
    ||||||||||||||||||||| |||||  ||| ||| |||||||||||||||| ||||    
T  28852670 aaaaggttttaaaaatagggtaaatttaaaaaattcttactaaaatcaaatagcggct 28852613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 14358555 - 14358496
Alignment:
Q  118 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctg 177  Q
    ||||| ||||||||||||| || |||||| |||||| | ||||||||||||||| |||||    
T  14358555 caaaatgttttaaaaatagtgtaaatttgaaaattttcaactaaaatcaaatagcggctg 14358496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 22576347 - 22576400
Alignment:
Q  118 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 171  Q
    ||||| ||||||||||||| | ||||||| |||||| | |||||||||||||||    
T  22576347 caaaatgttttaaaaatagtgacaatttgaaaattttcaactaaaatcaaatag 22576400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 106 - 190
Target Start/End: Complemental strand, 3125019 - 3124935
Alignment:
Q  106 caaaattcccttcaaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctat 190  Q
    |||||| ||||  ||||| |||||||||||| ||||||||| ||||||||| |||||||||||||||||||||  ||||||||||    
T  3125019 caaaatgccctaaaaaagattttaaaaatagtgtcaatttgaaaatttcctgctaaaatcaaatagtggctgaagcggccgctat 3124935  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 51850712 - 51850764
Alignment:
Q  119 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 171  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  51850712 aaaaggttttaaaaatatggtcaatttggaaatttcctactaaaatcaaatag 51850764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 178
Target Start/End: Complemental strand, 52643184 - 52643125
Alignment:
Q  119 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctga 178  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  52643184 aaaaggttttaaaaatagggtcaatttggaaatttccttctaaaatcaaacagcggctga 52643125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 195
Target Start/End: Original strand, 11389142 - 11389216
Alignment:
Q  121 aaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgct 195  Q
    ||||||||||||||| ||||||||| |||| |||||| ||||||||||||| || |||  |||||||||||||||    
T  11389142 aaggttttaaaaatatggtcaatttagaaaattcctattaaaatcaaatagcggttgaagcggccgctatccgct 11389216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 195
Target Start/End: Complemental strand, 12049626 - 12049549
Alignment:
Q  118 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgct 195  Q
    ||||| ||| |||||||| ||||||||||||||||| | ||||||||||||||| | ||||  |||||||||||||||    
T  12049626 caaaatgttctaaaaatatggtcaatttggaaattttcaactaaaatcaaatagcgtctgaagcggccgctatccgct 12049549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 195
Target Start/End: Complemental strand, 49600162 - 49600085
Alignment:
Q  118 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgct 195  Q
    ||||| ||||||||||||| ||||||||| |||||| | ||||||||||||||| || |||  || ||||||||||||    
T  49600162 caaaatgttttaaaaatagtgtcaatttgaaaattttcgactaaaatcaaatagcggttgaagcgtccgctatccgct 49600085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 54856822 - 54856752
Alignment:
Q  118 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgct 188  Q
    ||||| ||||||||||||| ||||||||| |||||| | ||||||||||||||| || |||  ||||||||    
T  54856822 caaaatgttttaaaaatagtgtcaatttgaaaattttcaactaaaatcaaatagcggttgaagcggccgct 54856752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 36557024 - 36557077
Alignment:
Q  118 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 171  Q
    ||||| ||||| |||||| ||||||||||||||||| | | |||||||||||||    
T  36557024 caaaatgtttttaaaatatggtcaatttggaaattttcaattaaaatcaaatag 36557077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 43437819 - 43437864
Alignment:
Q  126 tttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 171  Q
    ||||||| |||||| ||||||||  |||||||||||||||||||||    
T  43437819 tttaaaattagggttaatttggagttttcctactaaaatcaaatag 43437864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 30485151 - 30485203
Alignment:
Q  119 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 171  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30485151 aaaaggttttaaaaatatggtcaatttggaaatttcctactaaaatcaaatag 30485203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 3987352 - 3987279
Alignment:
Q  118 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatc 191  Q
    ||||| ||||| |||||| ||||||||||||||||| | ||||||||||||||| ||||||  ||||| |||||    
T  3987352 caaaatgtttttaaaatatggtcaatttggaaattttcaactaaaatcaaatagcggctgaagcggccactatc 3987279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 41653824 - 41653752
Alignment:
Q  118 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatc 191  Q
    ||||| ||||||||||||  | ||||||| |||||| | ||||||||||||||| ||||||  |||||||||||    
T  41653824 caaaatgttttaaaaataatgccaatttgaaaattttcaactaaaatcaaatag-ggctgaagcggccgctatc 41653752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 41653969 - 41653897
Alignment:
Q  118 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatc 191  Q
    ||||| ||||||||||||  ||||||||| |||||| | ||||||||||||||  ||||||  |||||||||||    
T  41653969 caaaatgttttaaaaataatgtcaatttgaaaattttcaactaaaatcaaata-cggctgaagcggccgctatc 41653897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 31203377 - 31203325
Alignment:
Q  119 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 171  Q
    |||||||||||||||| | ||||||||  |||||||||| |||||||| ||||    
T  31203377 aaaaggttttaaaaattgagtcaatttaaaaatttcctattaaaatcatatag 31203325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 10994 - 11046
Alignment:
Q  119 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 171  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  10994 aaaaggttttaaaaatagggtcaacttggaaatttcctactaaaattaaatag 11046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 35819076 - 35819004
Alignment:
Q  118 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatc 191  Q
    ||||||||||||||| |||| | ||||||||||||||| ||||||||||||||| ||||||  |||||||||||    
T  35819076 caaaaggttttaaaa-taggcttaatttggaaatttccaactaaaatcaaatagcggctgaagcggccgctatc 35819004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 45710089 - 45710158
Alignment:
Q  126 tttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgct 195  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||  ||||||  || | ||||||||||    
T  45710089 tttaaaaatagggtcaatttgaaaatttcctaccaaaatcaaataacggctgaagcgcctgctatccgct 45710158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 12733076 - 12733147
Alignment:
Q  106 caaaattcccttcaaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctga 178  Q
    |||||| ||||  ||||||||||||||||| || |  |||| |||||||||||||||||||||||||||||||    
T  12733076 caaaatgccctcaaaaaggttttaaaaatatggccg-tttgaaaatttcctactaaaatcaaatagtggctga 12733147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 17316378 - 17316438
Alignment:
Q  118 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctga 178  Q
    ||||| ||||||||||||| ||||||||| |||||| | ||||||||||||||| ||||||    
T  17316378 caaaatgttttaaaaatagtgtcaatttgaaaattttcaactaaaatcaaatagcggctga 17316438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 191
Target Start/End: Original strand, 7154970 - 7155043
Alignment:
Q  118 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatc 191  Q
    ||||| ||||||||||||| |||||| || |||||| | ||||||||||||||| ||| ||  |||||||||||    
T  7154970 caaaatgttttaaaaatagtgtcaatatgaaaattttcaactaaaatcaaatagcggccgaagcggccgctatc 7155043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 31034 - 31085
Alignment:
Q  119 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaata 170  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||||||||    
T  31034 aaaatgttttaaaaatacggtcaatttgaaaatttcctactaaaatcaaata 31085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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