View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9762_low_14 (Length: 251)
Name: NF9762_low_14
Description: NF9762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9762_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 61 - 239
Target Start/End: Complemental strand, 8833619 - 8833444
Alignment:
| Q |
61 |
tagtttttaaatataaaacatttaaataacaattttaatttacagatgttaaggagtctttgatttggtgataaaccctgtagtatcttctgtaaatgaa |
160 |
Q |
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| T |
8833619 |
tagtttttaaatataaaacatttaaataacaattttgatttacagatgttaaggagtctttgatttggtgataaaccctgtagtatct---gtaaatgaa |
8833523 |
T |
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| Q |
161 |
cttaaacctgtaccctgacgttcaacactagctgccttgttgagcaggaaagctagagcaataaacttaactatctctc |
239 |
Q |
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| T |
8833522 |
cttaaacctgtaccctgacgttcaacactagctgccttgttgagcaggaaagctagagcaataaacttaactatctctc |
8833444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 4806023 - 4805960
Alignment:
| Q |
64 |
tttttaaatataaa-acatttaaataacaattttaatttacagatgttaaggagtctttgattt |
126 |
Q |
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| T |
4806023 |
tttttaaatataaagacacgtaaataacaattttaatttatagatgttaatgagtctttaattt |
4805960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 23405376 - 23405434
Alignment:
| Q |
64 |
tttttaaatataaa-acatttaaataacaattttaatttacagatgttaaggagtcttt |
121 |
Q |
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| T |
23405376 |
tttttaaatataaagacacgtaaataacaattttaatttatagatgtcaatgagtcttt |
23405434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 25275710 - 25275648
Alignment:
| Q |
65 |
ttttaaatataaa-acatttaaataacaattttaatttacagatgttaaggagtctttgattt |
126 |
Q |
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||||||||||||| ||| |||| |||||||||||||| ||||||||| ||||||||||||| |
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| T |
25275710 |
ttttaaatataaagacacgtaaaaaacaattttaatttgtagatgttaatgagtctttgattt |
25275648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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