View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9762_low_15 (Length: 251)
Name: NF9762_low_15
Description: NF9762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9762_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 11854172 - 11854405
Alignment:
| Q |
1 |
gtacaaggaaaaatgtacacaacatatgtatgttctccatcagtgtctactcacacaaaagcatatctcactcttaatagttttgaaaagggtggagatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11854172 |
gtacaaggaaaaatgtacacaacatatgtatgttctccatcagtgtctactcacacaaaagcatatctcactcttaatagttttgaaaagggtggagatg |
11854271 |
T |
|
| Q |
101 |
gaggtggtccttcagaatgtgacaagcagtatcattccgatgacactcccgttgttgcactctcaaccggatggttcagccacaagagcaggtgcctcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11854272 |
gaggtggtccttcagaatgtgacaagcagtatcattccgatgacactcccgttgttgcactctcaaccggatggttcaaccacaagagcaggtgcctcaa |
11854371 |
T |
|
| Q |
201 |
caacattaccataagtgcgaatggaaaaagtgtg |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
11854372 |
caacattaccataagtgcgaatggaaaaagtgtg |
11854405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 11851458 - 11851691
Alignment:
| Q |
1 |
gtacaaggaaaaatgtacacaacatatgtatgttctccatcagtgtctactcacacaaaagcatatctcactcttaatagttttgaaaagggtggagatg |
100 |
Q |
| |
|
||||||||||| ||||||||||| |||| |||||| ||||||||||||||||| || || ||||| ||||| ||||| ||||| | || |||||||||| |
|
|
| T |
11851458 |
gtacaaggaaagatgtacacaacttatgaatgttcaccatcagtgtctactcatactaaggcatacctcacacttaacagtttccagaaaggtggagatg |
11851557 |
T |
|
| Q |
101 |
gaggtggtccttcagaatgtgacaagcagtatcattccgatgacactcccgttgttgcactctcaaccggatggttcagccacaagagcaggtgcctcaa |
200 |
Q |
| |
|
|||| || ||||||| ||||| || || |||||||| ||||||||||| ||||||||||| || ||||||||||||| | |||||||||| || ||||| |
|
|
| T |
11851558 |
gaggcggaccttcagcgtgtgataatcaatatcattctgatgacactccagttgttgcactttccaccggatggttcaacgacaagagcagatgtctcaa |
11851657 |
T |
|
| Q |
201 |
caacattaccataagtgcgaatggaaaaagtgtg |
234 |
Q |
| |
|
||| |||||||||||||| ||||||| ||||||| |
|
|
| T |
11851658 |
caagattaccataagtgccaatggaagaagtgtg |
11851691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 11850236 - 11850003
Alignment:
| Q |
1 |
gtacaaggaaaaatgtacacaacatatgtatgttctccatcagtgtctactcacacaaaagcatatctcactcttaatagttttgaaaagggtggagatg |
100 |
Q |
| |
|
||||| ||||||||||||||||| ||| |||||| |||||||| ||||||||||| ||||| | |||||| || ||||||||| || | |||||||||| |
|
|
| T |
11850236 |
gtacagggaaaaatgtacacaacttataaatgttcaccatcagtatctactcacactaaagcgtttctcacgctcaatagttttcaagaaggtggagatg |
11850137 |
T |
|
| Q |
101 |
gaggtggtccttcagaatgtgacaagcagtatcattccgatgacactcccgttgttgcactctcaaccggatggttcagccacaagagcaggtgcctcaa |
200 |
Q |
| |
|
||||||||||||||| ||||| || || |||||||| |||||||| || ||||||||||| || || |||||||||| | ||||||| || || ||||| |
|
|
| T |
11850136 |
gaggtggtccttcagcgtgtgataatcaatatcattctgatgacaccccagttgttgcactttctactggatggttcaacaacaagagtagatgtctcaa |
11850037 |
T |
|
| Q |
201 |
caacattaccataagtgcgaatggaaaaagtgtg |
234 |
Q |
| |
|
||| |||| || |||||||| |||| ||||||| |
|
|
| T |
11850036 |
caaaattaagattagtgcgaacggaagaagtgtg |
11850003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 16)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 29069252 - 29069019
Alignment:
| Q |
1 |
gtacaaggaaaaatgtacacaacatatgtatgttctccatcagtgtctactcacacaaaagcatatctcactcttaatagttttgaaaagggtggagatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29069252 |
gtacaaggaaaaatgtacacaacatatgtatgttctccatcagtgtctactcacacaaaagcatatctcactcttaatagttttgaaaagggtggagatg |
29069153 |
T |
|
| Q |
101 |
gaggtggtccttcagaatgtgacaagcagtatcattccgatgacactcccgttgttgcactctcaaccggatggttcagccacaagagcaggtgcctcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
29069152 |
gaggtggtccttcagaatgtgacaagcagtatcattccgatgacactcccgttgttgcactctcaaccggatggttcaaccgcaagagcaggtgcctcaa |
29069053 |
T |
|
| Q |
201 |
caacattaccataagtgcgaatggaaaaagtgtg |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
29069052 |
caacattaccataagtgcgaatggaaaaagtgtg |
29069019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 29111198 - 29110973
Alignment:
| Q |
1 |
gtacaaggaaaaatgtacacaacatatgtatgttctccatcagtgtctactcacacaaaagcatatctcactcttaatagttttgaaaagggtggagatg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29111198 |
gtacaaggaaaaatgtacacaacttatgtatgttcaccatcagtgtccactcacaccaaagcatatctcactcttaatagttttcaaaagggtggagatg |
29111099 |
T |
|
| Q |
101 |
gaggtggtccttcagaatgtgacaagcagtatcattccgatgacactcccgttgttgcactctcaaccggatggttcagccacaagagcaggtgcctcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||| ||| || |||||||| || || |
|
|
| T |
29111098 |
gaggtggtccttcagaatgtgacaagcagtatcattctgatgacactcctgttgttgcactttccaccggatggttcaaccataaaagcaggtgtctaaa |
29110999 |
T |
|
| Q |
201 |
caacattaccataagtgcgaatggaa |
226 |
Q |
| |
|
||||||||| || ||||| ||||||| |
|
|
| T |
29110998 |
caacattacaatcagtgctaatggaa |
29110973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 5 - 226
Target Start/End: Complemental strand, 29078443 - 29078222
Alignment:
| Q |
5 |
aaggaaaaatgtacacaacatatgtatgttctccatcagtgtctactcacacaaaagcatatctcactcttaatagttttgaaaagggtggagatggagg |
104 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29078443 |
aaggaaaaatgtacacaacttatgtatgttcaccatatgtgtccactcacaccaaagcatatctcactcttaatagttttgaaaagggtggagatggagg |
29078344 |
T |
|
| Q |
105 |
tggtccttcagaatgtgacaagcagtatcattccgatgacactcccgttgttgcactctcaaccggatggttcagccacaagagcaggtgcctcaacaac |
204 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| || ||||||||||||| ||| || |||||||| || |||||| |
|
|
| T |
29078343 |
cggtccttcagaatgtgacaagcaatatcattcagatgacactcctgttgttgcactttccaccggatggttcaaccataaaagcaggtgtctaaacaac |
29078244 |
T |
|
| Q |
205 |
attaccataagtgcgaatggaa |
226 |
Q |
| |
|
||||| || ||||| ||||||| |
|
|
| T |
29078243 |
attacaatcagtgctaatggaa |
29078222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 28956660 - 28956893
Alignment:
| Q |
1 |
gtacaaggaaaaatgtacacaacatatgtatgttctccatcagtgtctactcacacaaaagcatatctcactcttaatagttttgaaaagggtggagatg |
100 |
Q |
| |
|
||||||| ||||||||||||||| |||| |||||||||| ||||||||||| |||| || |||||||||||||||||||||||| |||| ||||| |||| |
|
|
| T |
28956660 |
gtacaagaaaaaatgtacacaacttatgaatgttctccagcagtgtctacttacaccaaggcatatctcactcttaatagttttcaaaatggtggtgatg |
28956759 |
T |
|
| Q |
101 |
gaggtggtccttcagaatgtgacaagcagtatcattccgatgacactcccgttgttgcactctcaaccggatggttcagccacaagagcaggtgcctcaa |
200 |
Q |
| |
|
||||||| |||||||||||||| || || || ||||| ||||||||||| ||||||||||| || ||||||||||||| |||| |||||||||| ||||| |
|
|
| T |
28956760 |
gaggtggcccttcagaatgtgataatcaataccattctgatgacactccagttgttgcactttccaccggatggttcaaccacgagagcaggtgtctcaa |
28956859 |
T |
|
| Q |
201 |
caacattaccataagtgcgaatggaaaaagtgtg |
234 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||| |
|
|
| T |
28956860 |
aaacattacaattagtgcgaatgggaaaagtgtg |
28956893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 29058486 - 29058254
Alignment:
| Q |
1 |
gtacaaggaaaaatgtacacaacatatgtatgttctccatcagtgtctactcacacaaaagcatatctcactcttaatagttttgaaaagggtggagatg |
100 |
Q |
| |
|
||||||||||| ||||||||||| |||| |||||| ||||| |||||| |||| || |||||||| ||||| ||||| |||||| |||| |||||||||| |
|
|
| T |
29058486 |
gtacaaggaaagatgtacacaacttatgaatgttcaccatcggtgtctgctcatactaaagcatacctcacacttaacagttttcaaaaaggtggagatg |
29058387 |
T |
|
| Q |
101 |
gaggtggtccttcagaatgtgacaagcagtatcattccgatgacactcccgttgttgcactctcaaccggatggttcagccacaagagcaggtgcctcaa |
200 |
Q |
| |
|
||||||| ||||||| |||||| || ||||||||||| ||||||||||| || |||||||| || || |||||||||| | | |||||||| || ||||| |
|
|
| T |
29058386 |
gaggtggcccttcagcatgtgataatcagtatcattctgatgacactccagtcgttgcactttccacaggatggttcaacgataagagcagatgtctcaa |
29058287 |
T |
|
| Q |
201 |
caacattaccataagtgcgaatggaaaaagtgt |
233 |
Q |
| |
|
||| |||||||||||||| |||||||||||||| |
|
|
| T |
29058286 |
caaaattaccataagtgccaatggaaaaagtgt |
29058254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 3617793 - 3617561
Alignment:
| Q |
1 |
gtacaaggaaaaatgtacacaacatatgtatgttctccatcagtgtctactcacacaaaagcatatctcactcttaatagttttgaaaagggtggagatg |
100 |
Q |
| |
|
||||||||||| ||||||||||| |||| |||||| |||||||| |||||||| || || ||||| ||||| |||||||||||| | || |||||||||| |
|
|
| T |
3617793 |
gtacaaggaaagatgtacacaacttatgaatgttcaccatcagtatctactcatactaaggcatacctcacacttaatagttttcagaaaggtggagatg |
3617694 |
T |
|
| Q |
101 |
gaggtggtccttcagaatgtgacaagcagtatcattccgatgacactcccgttgttgcactctcaaccggatggttcagccacaagagcaggtgcctcaa |
200 |
Q |
| |
|
||||||| ||||||| |||||| || ||||||||||| ||||| || || || |||||||| || || |||||||||| | |||||||||| || || || |
|
|
| T |
3617693 |
gaggtggcccttcagcatgtgataatcagtatcattctgatgatacaccagtcgttgcactttccacaggatggttcaacgacaagagcagatgtctgaa |
3617594 |
T |
|
| Q |
201 |
caacattaccataagtgcgaatggaaaaagtgt |
233 |
Q |
| |
|
||| |||||||||||||| |||||||||||||| |
|
|
| T |
3617593 |
caagattaccataagtgccaatggaaaaagtgt |
3617561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 29071714 - 29071482
Alignment:
| Q |
1 |
gtacaaggaaaaatgtacacaacatatgtatgttctccatcagtgtctactcacacaaaagcatatctcactcttaatagttttgaaaagggtggagatg |
100 |
Q |
| |
|
||||||||||| ||||||||||| |||| |||||| ||||||||||||||||| || || ||||| ||||| ||||| ||||| | || |||||||||| |
|
|
| T |
29071714 |
gtacaaggaaagatgtacacaacttatgaatgttcaccatcagtgtctactcatactaaggcatacctcacacttaacagtttccagaaaggtggagatg |
29071615 |
T |
|
| Q |
101 |
gaggtggtccttcagaatgtgacaagcagtatcattccgatgacactcccgttgttgcactctcaaccggatggttcagccacaagagcaggtgcctcaa |
200 |
Q |
| |
|
|||| || ||||||| ||||| || || |||||||| ||||||||||| ||||||||||| || ||||||||||||| | |||||||||| || ||||| |
|
|
| T |
29071614 |
gaggcggaccttcagcgtgtgataatcaatatcattctgatgacactccagttgttgcactttccaccggatggttcaacgacaagagcagatgtctcaa |
29071515 |
T |
|
| Q |
201 |
caacattaccataagtgcgaatggaaaaagtgt |
233 |
Q |
| |
|
||| |||||||||||||| ||||||| |||||| |
|
|
| T |
29071514 |
caagattaccataagtgccaatggaagaagtgt |
29071482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 4 - 234
Target Start/End: Original strand, 29116043 - 29116273
Alignment:
| Q |
4 |
caaggaaaaatgtacacaacatatgtatgttctccatcagtgtctactcacacaaaagcatatctcactcttaatagttttgaaaagggtggagatggag |
103 |
Q |
| |
|
|||||||||||||||||||| ||| ||| || |||||||| ||||||||||| |||||||||||||| || |||||||||||| | ||||||||||||| |
|
|
| T |
29116043 |
caaggaaaaatgtacacaacttataaatgctcaccatcagtatctactcacactaaagcatatctcacgctcaatagttttgaagaaggtggagatggag |
29116142 |
T |
|
| Q |
104 |
gtggtccttcagaatgtgacaagcagtatcattccgatgacactcccgttgttgcactctcaaccggatggttcagccacaagagcaggtgcctcaacaa |
203 |
Q |
| |
|
|||||||||||| ||||| || || ||||||||||| ||||| || ||||||||||| || || |||||||||| | ||||||| || || |||||||| |
|
|
| T |
29116143 |
gtggtccttcagcgtgtgataatcaatatcattccgacgacaccccggttgttgcactttctactggatggttcaacaacaagagtagatgtctcaacaa |
29116242 |
T |
|
| Q |
204 |
cattaccataagtgcgaatggaaaaagtgtg |
234 |
Q |
| |
|
|||| || |||||||| |||| ||||||| |
|
|
| T |
29116243 |
aattaagattagtgcgaacggaagaagtgtg |
29116273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 3618858 - 3619091
Alignment:
| Q |
1 |
gtacaaggaaaaatgtacacaacatatgtatgttctccatcagtgtctactcacacaaaagcatatctcactcttaatagttttgaaaagggtggagatg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||| || |||| |||||||||||| |||||||||||||| || || |||||| |||| |||||||||| |
|
|
| T |
3618858 |
gtacaaggaaaaatgtacacaacttatcaatgttcaccgtcagcgtctactcacactaaagcatatctcacgctcaacagttttcaaaaaggtggagatg |
3618957 |
T |
|
| Q |
101 |
gaggtggtccttcagaatgtgacaagcagtatcattccgatgacactcccgttgttgcactctcaaccggatggttcagccacaagagcaggtgcctcaa |
200 |
Q |
| |
|
|||| || ||||| | |||||| || || || ||||| ||||||||||| ||||||||||| || || |||||||||| | |||| || || || || || |
|
|
| T |
3618958 |
gaggcggcccttcggcatgtgataaccaataccattctgatgacactcctgttgttgcactttccactggatggttcaacaacaaaagtagatgtctgaa |
3619057 |
T |
|
| Q |
201 |
caacattaccataagtgcgaatggaaaaagtgtg |
234 |
Q |
| |
|
||| |||||||| || |||||||||| ||||||| |
|
|
| T |
3619058 |
caaaattaccatcagcgcgaatggaagaagtgtg |
3619091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 29101895 - 29102120
Alignment:
| Q |
1 |
gtacaaggaaaaatgtacacaacatatgtatgttctccatcagtgtctactcacacaaaagcatatctcactcttaatagttttgaaaagggtggagatg |
100 |
Q |
| |
|
||||| ||||||||||||||||||||| ||| || |||||||| ||||||||||| ||||| |||||||| || ||||||||| || | |||||||||| |
|
|
| T |
29101895 |
gtacagggaaaaatgtacacaacatataaatgctcaccatcagtatctactcacactaaagcgtatctcacgctcaatagttttcaagaaggtggagatg |
29101994 |
T |
|
| Q |
101 |
gaggtggtccttcagaatgtgacaagcagtatcattccgatgacactcccgttgttgcactctcaaccggatggttcagccacaagagcaggtgcctcaa |
200 |
Q |
| |
|
||||||| ||||||| ||||| || || ||||||||||||||||| || ||||||||||| || || |||||||||| | ||||||| || || ||||| |
|
|
| T |
29101995 |
gaggtggaccttcagcgtgtgataatcaatatcattccgatgacaccccggttgttgcactttctactggatggttcaacaacaagagtagatgtctcaa |
29102094 |
T |
|
| Q |
201 |
caacattaccataagtgcgaatggaa |
226 |
Q |
| |
|
||| |||| || |||||||| |||| |
|
|
| T |
29102095 |
caaaattaagattagtgcgaacggaa |
29102120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 29072932 - 29073165
Alignment:
| Q |
1 |
gtacaaggaaaaatgtacacaacatatgtatgttctccatcagtgtctactcacacaaaagcatatctcactcttaatagttttgaaaagggtggagatg |
100 |
Q |
| |
|
||||| ||||||||||||||||| ||| |||||| |||||||| ||||||||||| |||| || | |||| || ||||||||| || | |||||||||| |
|
|
| T |
29072932 |
gtacagggaaaaatgtacacaacttataaatgttcaccatcagtatctactcacactaaagaatttatcacgctaaatagttttcaagaaggtggagatg |
29073031 |
T |
|
| Q |
101 |
gaggtggtccttcagaatgtgacaagcagtatcattccgatgacactcccgttgttgcactctcaaccggatggttcagccacaagagcaggtgcctcaa |
200 |
Q |
| |
|
||||||||||||||| ||||| || || |||||||| ||||||||||| ||||||||||| || | |||||||||| | ||||||| || || ||||| |
|
|
| T |
29073032 |
gaggtggtccttcagcgtgtgataatcaatatcattctgatgacactccagttgttgcactttctagtggatggttcaacaacaagagtagatgtctcaa |
29073131 |
T |
|
| Q |
201 |
caacattaccataagtgcgaatggaaaaagtgtg |
234 |
Q |
| |
|
||| |||| || |||||||| |||| ||||||| |
|
|
| T |
29073132 |
caaaattaagattagtgcgaacggaagaagtgtg |
29073165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 29098171 - 29098331
Alignment:
| Q |
1 |
gtacaaggaaaaatgtacacaacatatgtatgttctccatcagtgtctactcacacaaaagcatatctcactcttaatagttttgaaaagggtggagatg |
100 |
Q |
| |
|
||||||||| ||||||| ||||| |||| |||||| ||||||||||||||| |||| ||||||||||||| |||||||||||| |||| ||||| |||| |
|
|
| T |
29098171 |
gtacaaggacaaatgtatacaacttatgaatgttcgccatcagtgtctacttacactaaagcatatctcatacttaatagttttcaaaaaggtggtgatg |
29098270 |
T |
|
| Q |
101 |
gaggtggtccttcagaatgtgacaagcagtatcattccgatgacactcccgttgttgcact |
161 |
Q |
| |
|
| ||||||||||| | ||||| || || |||||||| || || ||| | ||||||||||| |
|
|
| T |
29098271 |
gtggtggtccttcgtattgtgataatcaatatcattctgacgatacttcagttgttgcact |
29098331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 29113423 - 29113493
Alignment:
| Q |
1 |
gtacaaggaaaaatgtacacaacatatgtatgttctccatcagtgtctactcacacaaaagcatatctcac |
71 |
Q |
| |
|
||||||||| |||||| ||||| |||| |||||| |||||||| |||||| |||| |||||||||||||| |
|
|
| T |
29113423 |
gtacaaggacaaatgtgtacaacttatgaatgttcgccatcagtatctacttacactaaagcatatctcac |
29113493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 28982100 - 28982165
Alignment:
| Q |
140 |
atgacactcccgttgttgcactctcaaccggatggttcagccacaagagcaggtgcctcaacaaca |
205 |
Q |
| |
|
|||||||||| || |||||||| |||||||||||||||| |||| | || ||||||||||| |||| |
|
|
| T |
28982100 |
atgacactccagtagttgcactttcaaccggatggttcaaccacgacagtaggtgcctcaaaaaca |
28982165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 178
Target Start/End: Original strand, 29066649 - 29066781
Alignment:
| Q |
46 |
tctactcacacaaaagcatatctcactcttaatagttttgaaaagggtggagatggaggtggtccttcagaatgtgacaagcagtatcattccgatgaca |
145 |
Q |
| |
|
|||| |||||| || ||||||||||||||||| ||||| ||||| ||||||||||| || |||||| |||||||| ||||| |||||||||| | |
|
|
| T |
29066649 |
tctagtcacacgaaggcatatctcactcttaacagtttcgaaaaaggtggagatggtaacggcccttcaacttgtgacaacaagtattattccgatgata |
29066748 |
T |
|
| Q |
146 |
ctcccgttgttgcactctcaaccggatggttca |
178 |
Q |
| |
|
| || || || ||||| || || |||||||||| |
|
|
| T |
29066749 |
cgcctgtggtggcactttccactggatggttca |
29066781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 29061163 - 29061213
Alignment:
| Q |
128 |
agtatcattccgatgacactcccgttgttgcactctcaaccggatggttca |
178 |
Q |
| |
|
||||| ||||| |||||||||| || ||| ||||||||||||||||||||| |
|
|
| T |
29061163 |
agtattattccaatgacactccggtggtttcactctcaaccggatggttca |
29061213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 24241396 - 24241296
Alignment:
| Q |
7 |
ggaaaaatgtacacaacatatgtatgttctccatcagtgtctactcacacaaaagcatatctcactcttaatagttttgaaaagggtggagatggaggtg |
106 |
Q |
| |
|
||||||||||| ||||| |||| |||||||| |||| | |||| |||||| |||| |||| ||||||||| | ||| |||| | ||||||||||||| |
|
|
| T |
24241396 |
ggaaaaatgtatacaacttatgaatgttctctatcaatatctagtcacaccaaagtttatcacactcttaacattttccaaaaacgcggagatggaggtg |
24241297 |
T |
|
| Q |
107 |
g |
107 |
Q |
| |
|
| |
|
|
| T |
24241296 |
g |
24241296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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