View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9762_low_16 (Length: 243)
Name: NF9762_low_16
Description: NF9762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9762_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 12381955 - 12381749
Alignment:
| Q |
14 |
ggagcacagagtggttgtaaacacaaagaaagaaaggttttccattccattcttcttttacccaggtcaccatgttacagtgaagcctgcagaagagcta |
113 |
Q |
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| T |
12381955 |
ggagcacagagtggttgtaaacacaaagaaagaaaggttttccattccattcttcttttacccaggtcaccatgttacagtgaagcctgcagaagagcta |
12381856 |
T |
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| Q |
114 |
gtgaatgagaaaaatcctgcaagatataaaccatacaatgttggcaagttctatgctaatagaaaccgtagtgatttcaacaaacgtgaggttgagaata |
213 |
Q |
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| T |
12381855 |
gtgaatgagaaaaatcctgcaagatataaaccatacaatgttggcaagttctatgctaatagaaaccgtagtgatttcaacaaacgtgaggttgagaata |
12381756 |
T |
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| Q |
214 |
tccaaat |
220 |
Q |
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||||||| |
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| T |
12381755 |
tccaaat |
12381749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 12386022 - 12385816
Alignment:
| Q |
14 |
ggagcacagagtggttgtaaacacaaagaaagaaaggttttccattccattcttcttttacccaggtcaccatgttacagtgaagcctgcagaagagcta |
113 |
Q |
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| T |
12386022 |
ggagcacagagtggttgtaaacacaaagaaagaaaggttttccattccattcttcttttacccaggtcaccatgttacagtgaagcctgcagaagagcta |
12385923 |
T |
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| Q |
114 |
gtgaatgagaaaaatcctgcaagatataaaccatacaatgttggcaagttctatgctaatagaaaccgtagtgatttcaacaaacgtgaggttgagaata |
213 |
Q |
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| T |
12385922 |
gtgaatgagaaaaatcctgcaagatataaaccatacaatgttggcaagttctatgctaatagaaaccgtagtgatttcaacaaacgtgaggttgagaata |
12385823 |
T |
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| Q |
214 |
tccaaat |
220 |
Q |
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| T |
12385822 |
tccaaat |
12385816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 51 - 220
Target Start/End: Complemental strand, 12365029 - 12364860
Alignment:
| Q |
51 |
ttttccattccattcttcttttacccaggtcaccatgttacagtgaagcctgcagaagagctagtgaatgagaaaaatcctgcaagatataaaccataca |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12365029 |
ttttccattccattcttcttttacccaggtcaccatgttacagtgaagcctgcagaagagctagtgaatgagaaaaatcctgcaagatataaaccataca |
12364930 |
T |
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| Q |
151 |
atgttggcaagttctatgctaatagaaaccgtagtgatttcaacaaacgtgaggttgagaatatccaaat |
220 |
Q |
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| T |
12364929 |
atgttggcaagttctatgctaatagaaaccgtagtgatttcaacaaacgtgaggttgagaatatccaaat |
12364860 |
T |
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