View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9762_low_17 (Length: 241)

Name: NF9762_low_17
Description: NF9762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9762_low_17
NF9762_low_17
[»] chr2 (5 HSPs)
chr2 (80-226)||(41170544-41170690)
chr2 (1-58)||(41170380-41170436)
chr2 (139-178)||(3049974-3050013)
chr2 (133-174)||(41875688-41875729)
chr2 (116-152)||(43422118-43422154)
[»] chr6 (3 HSPs)
chr6 (133-182)||(1401103-1401152)
chr6 (133-176)||(1275143-1275186)
chr6 (133-175)||(24838777-24838819)
[»] chr7 (3 HSPs)
chr7 (119-155)||(3258107-3258143)
chr7 (133-178)||(18350738-18350783)
chr7 (133-176)||(30812142-30812185)
[»] chr1 (5 HSPs)
chr1 (79-139)||(43029383-43029443)
chr1 (82-137)||(4576837-4576892)
chr1 (80-139)||(25479611-25479670)
chr1 (133-175)||(17422972-17423014)
chr1 (133-178)||(4622087-4622132)
[»] chr5 (4 HSPs)
chr5 (80-135)||(17258868-17258923)
chr5 (133-178)||(2568652-2568697)
chr5 (133-165)||(26209457-26209489)
chr5 (133-165)||(32172647-32172679)
[»] chr3 (3 HSPs)
chr3 (135-178)||(24280707-24280750)
chr3 (133-175)||(43875642-43875684)
chr3 (125-166)||(25183031-25183074)
[»] chr8 (5 HSPs)
chr8 (133-175)||(6509337-6509379)
chr8 (80-126)||(8535764-8535810)
chr8 (137-178)||(27028829-27028870)
chr8 (80-136)||(7646236-7646292)
chr8 (120-156)||(26496430-26496466)


Alignment Details
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 80 - 226
Target Start/End: Original strand, 41170544 - 41170690
Alignment:
Q  80 agcttatgaaaataagcttaaaatagccgataaacatgtcataaactattttcataagctataagctgttttcatatgctatcatggtgagcttatgaag 179  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41170544 agcttatgaaaataagcttaaaatagcttataaacatgtcataaactattttcataagctataagctgttttcatatgctatcatggagagcttatgaag 41170643  T
Q  180 atagacataaaaatgaaaatagcttataaacagctcataaactattt 226  Q
    || | ||||||||| ||||||||||||||||||||||||||||||||    
T  41170644 atgggcataaaaattaaaatagcttataaacagctcataaactattt 41170690  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 41170380 - 41170436
Alignment:
Q  1 aattcgattttgcaggtttccacattgttctactatgataacagctttaatttcagct 58  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  41170380 aattcgattttgcaggtttccacattgttctactattataacagc-ttaatttcagct 41170436  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 178
Target Start/End: Original strand, 3049974 - 3050013
Alignment:
Q  139 tataagctgttttcatatgctatcatggtgagcttatgaa 178  Q
    ||||||||||||||||| |||||||||| |||||||||||    
T  3049974 tataagctgttttcataagctatcatggagagcttatgaa 3050013  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 41875729 - 41875688
Alignment:
Q  133 ataagctataagctgttttcatatgctatcatggtgagctta 174  Q
    ||||||| ||||||||||||||| |||||| |||||||||||    
T  41875729 ataagctgtaagctgttttcataagctatcttggtgagctta 41875688  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 43422154 - 43422118
Alignment:
Q  116 tgtcataaactattttcataagctataagctgttttc 152  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  43422154 tgtcataaacaattttcataagctataaactgttttc 43422118  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 1401103 - 1401152
Alignment:
Q  133 ataagctataagctgttttcatatgctatcatggtgagcttatgaagata 182  Q
    ||||||||||||||||||||||| |||||||||| ||||||||| |||||    
T  1401103 ataagctataagctgttttcataagctatcatggagagcttatggagata 1401152  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 176
Target Start/End: Original strand, 1275143 - 1275186
Alignment:
Q  133 ataagctataagctgttttcatatgctatcatggtgagcttatg 176  Q
    ||||||||||||||||||||||||| |||| ||| |||||||||    
T  1275143 ataagctataagctgttttcatatgttatcctggagagcttatg 1275186  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 175
Target Start/End: Complemental strand, 24838819 - 24838777
Alignment:
Q  133 ataagctataagctgttttcatatgctatcatggtgagcttat 175  Q
    ||||||||||||||| ||||||| |||||||||| ||||||||    
T  24838819 ataagctataagctgatttcataagctatcatggagagcttat 24838777  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 3258107 - 3258143
Alignment:
Q  119 cataaactattttcataagctataagctgttttcata 155  Q
    |||||||||||||||||||||||||||||||||||||    
T  3258107 cataaactattttcataagctataagctgttttcata 3258143  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 18350783 - 18350738
Alignment:
Q  133 ataagctataagctgttttcatatgctatcatggtgagcttatgaa 178  Q
    ||||| ||||||||||||||||| |||||||||| |||||||||||    
T  18350783 ataagttataagctgttttcataagctatcatggagagcttatgaa 18350738  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 176
Target Start/End: Original strand, 30812142 - 30812185
Alignment:
Q  133 ataagctataagctgttttcatatgctatcatggtgagcttatg 176  Q
    ||||||||||||||||||||||  |||||||||| |||||||||    
T  30812142 ataagctataagctgttttcattagctatcatggagagcttatg 30812185  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 43029443 - 43029383
Alignment:
Q  79 aagcttatgaaaataagcttaaaatagccgataaacatgtcataaactattttcataagct 139  Q
    ||||||||| ||||||||| ||||||||  ||| |||||| ||||||| ||||||||||||    
T  43029443 aagcttatggaaataagctgaaaatagcttatagacatgtaataaactgttttcataagct 43029383  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 4576837 - 4576892
Alignment:
Q  82 cttatgaaaataagcttaaaatagccgataaacatgtcataaactattttcataag 137  Q
    |||||||||||||||| || | | |  |||||||||||||||||||||||||||||    
T  4576837 cttatgaaaataagctgaacacaacttataaacatgtcataaactattttcataag 4576892  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 25479611 - 25479670
Alignment:
Q  80 agcttatgaaaataagcttaaaatagccgataaacatgtcataaactattttcataagct 139  Q
    |||||||||||||||||| |||| | |  || |||||||||||| |||||||||||||||    
T  25479611 agcttatgaaaataagctgaaaacaactaatgaacatgtcataatctattttcataagct 25479670  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 175
Target Start/End: Complemental strand, 17423014 - 17422972
Alignment:
Q  133 ataagctataagctgttttcatatgctatcatggtgagcttat 175  Q
    |||||||||||| ||||||||||||||||||||| ||| ||||    
T  17423014 ataagctataagttgttttcatatgctatcatggagaggttat 17422972  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 4622087 - 4622132
Alignment:
Q  133 ataagctataagctgttttcatatgctatcatggtgagcttatgaa 178  Q
    |||||||||||||||||| ||||||||||| ||| |||||| ||||    
T  4622087 ataagctataagctgtttccatatgctatcttggagagcttgtgaa 4622132  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 17258923 - 17258868
Alignment:
Q  80 agcttatgaaaataagcttaaaatagccgataaacatgtcataaactattttcata 135  Q
    |||||||||||||||||| |||| |||  || |||||||||||| |||||||||||    
T  17258923 agcttatgaaaataagctgaaaacagcttatgaacatgtcataagctattttcata 17258868  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 2568652 - 2568697
Alignment:
Q  133 ataagctataagctgttttcatatgctatcatggtgagcttatgaa 178  Q
    |||||||||||| |||||||||| |||||||||| ||||| |||||    
T  2568652 ataagctataagttgttttcataagctatcatggagagctaatgaa 2568697  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 165
Target Start/End: Complemental strand, 26209489 - 26209457
Alignment:
Q  133 ataagctataagctgttttcatatgctatcatg 165  Q
    ||||||||||||||||||||||| |||||||||    
T  26209489 ataagctataagctgttttcataagctatcatg 26209457  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 32172647 - 32172679
Alignment:
Q  133 ataagctataagctgttttcatatgctatcatg 165  Q
    ||||||||||||||||||||||| |||||||||    
T  32172647 ataagctataagctgttttcataagctatcatg 32172679  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 178
Target Start/End: Original strand, 24280707 - 24280750
Alignment:
Q  135 aagctataagctgttttcatatgctatcatggtgagcttatgaa 178  Q
    ||||||||||||||| ||||| |||||||||| |||||||||||    
T  24280707 aagctataagctgttgtcataagctatcatggagagcttatgaa 24280750  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 43875642 - 43875684
Alignment:
Q  133 ataagctataagctgttttcatatgctatcatggtgagcttat 175  Q
    |||||||||||| |||||||||| |||||||||| ||||||||    
T  43875642 ataagctataagttgttttcataagctatcatggagagcttat 43875684  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 25183074 - 25183031
Alignment:
Q  125 ctattttcata--agctataagctgttttcatatgctatcatgg 166  Q
    |||||||||||  |||||||||||||||||||| ||||||||||    
T  25183074 ctattttcatatgagctataagctgttttcataagctatcatgg 25183031  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 175
Target Start/End: Complemental strand, 6509379 - 6509337
Alignment:
Q  133 ataagctataagctgttttcatatgctatcatggtgagcttat 175  Q
    ||||||||||||||||||||||| |||||| ||| ||||||||    
T  6509379 ataagctataagctgttttcataagctatcctggagagcttat 6509337  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 8535810 - 8535764
Alignment:
Q  80 agcttatgaaaataagcttaaaatagccgataaacatgtcataaact 126  Q
    |||||||| ||||||||||||||||||  |||| |||||||||||||    
T  8535810 agcttatggaaataagcttaaaatagcttataagcatgtcataaact 8535764  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 27028829 - 27028870
Alignment:
Q  137 gctataagctgttttcatatgctatcatggtgagcttatgaa 178  Q
    ||||||||||||||||||| |||||| ||| |||||||||||    
T  27028829 gctataagctgttttcataagctatcttggagagcttatgaa 27028870  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 7646236 - 7646292
Alignment:
Q  80 agcttatgaaaataagcttaaaatagccgataaacatgtcataaactattttcataa 136  Q
    |||||||| ||||||||| |||||||| ||| |||||||||||| |  |||||||||    
T  7646236 agcttatggaaataagctgaaaatagctgatcaacatgtcataagcagttttcataa 7646292  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 26496430 - 26496466
Alignment:
Q  120 ataaactattttcataagctataagctgttttcatat 156  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  26496430 ataaactgttttcataaactataagctgttttcatat 26496466  T

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