View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9762_low_18 (Length: 240)
Name: NF9762_low_18
Description: NF9762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9762_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 28804036 - 28803814
Alignment:
| Q |
1 |
ctctaactctattagccacagttttgatcctcatcttctttccatcaagttcaaactgagaccctccatccacaggatacctcaaaggcaaactcatatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28804036 |
ctctaactctattagccacagttttgatcctcatcttctttccatcaagttcaaactgagaccctccatccacaggatacctcaaaggcaaactcatatg |
28803937 |
T |
|
| Q |
101 |
atagcaatagtattgttcctttccctccaccatagactctgaatccgggggattcacggctgtaccgtgaaatgtcctcttacaatttgcacatctaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28803936 |
atagcaatagtattgttcctttccctccaccatagactctgaatccgggggattcacggctgtaccgtgaaatgtcctcttacaatttgcacatctaaga |
28803837 |
T |
|
| Q |
201 |
gaacagtcttcatactttctctc |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
28803836 |
gaacagtcttcatactttctctc |
28803814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University