View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9762_low_2 (Length: 409)
Name: NF9762_low_2
Description: NF9762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9762_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 392
Target Start/End: Complemental strand, 1248370 - 1247995
Alignment:
| Q |
17 |
agggagaacaaatcaagaacaagaccaaattacttggcttgttctcccacattgtacatttattaataataatcattgaaaatgggcaactgtgctggca |
116 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1248370 |
agggagaacaaatcaagaacaagaccaacttacttggcttgttctcccacattgtacatttattaataataatcattgaaaatgggcaactgtgctggca |
1248271 |
T |
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| Q |
117 |
accctaggaccgacgaaagtgacgctccagtccctgtccccgagcctgtcaccgaggaggttaaggttgaacagcaagccaaggagaccaaagctgagga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1248270 |
accctaggaccgacgaaagtgacgctccagtccctgtccctgagcctgtcaccgaggaggttaaggttgaacagcaagccaaggagaccaaagctgagga |
1248171 |
T |
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| Q |
217 |
gaccgttaaggcctccgacgataagtctctaggcaccttgctcagtgaggtatgtattcttatataagcaatcatattcatgcacataaatccgatattg |
316 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1248170 |
gaccgttaaggcctctgacgataagtctctaggcaccttgctcagtgaggtatgtattcttatataagcaatcatattcatgcacataaatccgatattg |
1248071 |
T |
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| Q |
317 |
aatatccaacaccatatagttnnnnnnntgactaagtataaaatagtcattcgtgaaattttcggtattgttatct |
392 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1248070 |
aatatccaacaccatatagttaaaaaaatgactaagtataaaatagtcattcgtgaaattttcggtattgttatct |
1247995 |
T |
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