View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9762_low_21 (Length: 237)

Name: NF9762_low_21
Description: NF9762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9762_low_21
NF9762_low_21
[»] scaffold0182 (2 HSPs)
scaffold0182 (45-117)||(502-574)
scaffold0182 (172-221)||(631-680)
[»] chr7 (2 HSPs)
chr7 (46-118)||(47930432-47930504)
chr7 (172-223)||(47930558-47930609)
[»] chr3 (4 HSPs)
chr3 (46-118)||(54943232-54943304)
chr3 (172-223)||(54943358-54943409)
chr3 (69-118)||(5881805-5881854)
chr3 (172-221)||(5881908-5881957)
[»] chr4 (3 HSPs)
chr4 (46-118)||(43946433-43946505)
chr4 (172-221)||(43946330-43946379)
chr4 (43-87)||(46122199-46122243)
[»] chr5 (4 HSPs)
chr5 (45-115)||(12834137-12834207)
chr5 (45-115)||(12866115-12866185)
chr5 (172-223)||(12834027-12834078)
chr5 (172-223)||(12866005-12866056)
[»] chr6 (2 HSPs)
chr6 (172-221)||(16859204-16859253)
chr6 (52-104)||(16864551-16864603)
[»] chr2 (1 HSPs)
chr2 (1-42)||(8833941-8833982)


Alignment Details
Target: scaffold0182 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 502 - 574
Alignment:
Q  45 aactagggagaccacacgtgcgttgcacgggtttgcttaaattttgtaacataaatgaaaagaaaatgttggt 117  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  502 aactagggagacaacccgtgcgttgcacgggtttgcttaaattttgtaacataaatgaaaagaaaatgttggt 574  T

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Target: scaffold0182; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 631 - 680
Alignment:
Q  172 agttgggtttgatgaagcaaaagcgcatttgcatgctatcagatgtaaat 221  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  631 agttgggtttgatgaagcaaaagcgcatttgcatgctattagatgtaaat 680  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 47930432 - 47930504
Alignment:
Q  46 actagggagaccacacgtgcgttgcacgggtttgcttaaattttgtaacataaatgaaaagaaaatgttggtc 118  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  47930432 actagggagacaacccgtgcgttgcacgggtttgcttaaattttgtaacataaatcaaaagaaaatgttggtc 47930504  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 47930558 - 47930609
Alignment:
Q  172 agttgggtttgatgaagcaaaagcgcatttgcatgctatcagatgtaaatct 223  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47930558 agttgggtttgatgaagtaaaagcgcatttgcatgctatcagatgtaaatct 47930609  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 54943232 - 54943304
Alignment:
Q  46 actagggagaccacacgtgcgttgcacgggtttgcttaaattttgtaacataaatgaaaagaaaatgttggtc 118  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  54943232 actagggagacaacccgtgcgttgcacgggtttgcttaaattttgtaacataaatcaaaagaaaatgttggtc 54943304  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 54943358 - 54943409
Alignment:
Q  172 agttgggtttgatgaagcaaaagcgcatttgcatgctatcagatgtaaatct 223  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  54943358 agttgggtttgatgaagtaaaagcgcatttgcatgctatcagatgtaaatct 54943409  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 5881805 - 5881854
Alignment:
Q  69 gcacgggtttgcttaaattttgtaacataaatgaaaagaaaatgttggtc 118  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5881805 gcacgggtttgtttaaattttgtaacataaatgaaaagaaaatgttggtc 5881854  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 5881908 - 5881957
Alignment:
Q  172 agttgggtttgatgaagcaaaagcgcatttgcatgctatcagatgtaaat 221  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5881908 agttgggtttgatgaagcaaaagcgcatttgcatgctattagatgtaaat 5881957  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 118
Target Start/End: Complemental strand, 43946505 - 43946433
Alignment:
Q  46 actagggagaccacacgtgcgttgcacgggtttgcttaaattttgtaacataaatgaaaagaaaatgttggtc 118  Q
    ||||||||||| || |||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  43946505 actagggagacaactcgtgcgttgcacgggtttgactaaattttttaacataaatgaaaagaaaatgttggtc 43946433  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 43946379 - 43946330
Alignment:
Q  172 agttgggtttgatgaagcaaaagcgcatttgcatgctatcagatgtaaat 221  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  43946379 agttgggtttgatgaagcaaaagcgcatttgcatgctattagatgtaaat 43946330  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 46122199 - 46122243
Alignment:
Q  43 ctaactagggagaccacacgtgcgttgcacgggtttgcttaaatt 87  Q
    ||||||||||| || || ||||||||||||||||||| |||||||    
T  46122199 ctaactagggatacaacccgtgcgttgcacgggtttgattaaatt 46122243  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 12834207 - 12834137
Alignment:
Q  45 aactagggagaccacacgtgcgttgcacgggtttgcttaaattttgtaacataaatgaaaagaaaatgttg 115  Q
    |||||||||||| || |||| |||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  12834207 aactagggagacaacccgtgtgttgcacgggtttgattaaattttttaacataaatgaaaagaaaatgttg 12834137  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 12866185 - 12866115
Alignment:
Q  45 aactagggagaccacacgtgcgttgcacgggtttgcttaaattttgtaacataaatgaaaagaaaatgttg 115  Q
    |||||||||||| || |||| |||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  12866185 aactagggagacaacccgtgtgttgcacgggtttgattaaattttttaacataaatgaaaagaaaatgttg 12866115  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 12834078 - 12834027
Alignment:
Q  172 agttgggtttgatgaagcaaaagcgcatttgcatgctatcagatgtaaatct 223  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12834078 agttgggtttgatgaagcaaaagcgcatttgcatgctattagatgtaaatct 12834027  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 12866056 - 12866005
Alignment:
Q  172 agttgggtttgatgaagcaaaagcgcatttgcatgctatcagatgtaaatct 223  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12866056 agttgggtttgatgaagcaaaagcgcatttgcatgctattagatgtaaatct 12866005  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 16859253 - 16859204
Alignment:
Q  172 agttgggtttgatgaagcaaaagcgcatttgcatgctatcagatgtaaat 221  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16859253 agttgggtttgatgaagcaaaagcgcatttgcatgctattagatgtaaat 16859204  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 16864603 - 16864551
Alignment:
Q  52 gagaccacacgtgcgttgcacgggtttgcttaaattttgtaacataaatgaaa 104  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  16864603 gagacaacccgtgcgttgcacgggtttgcttaaattttgtaacataaatgaaa 16864551  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8833941 - 8833982
Alignment:
Q  1 gtgtcactttaatatttattcacagtatattttagtttagtt 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8833941 gtgtcactttaatatttattcacagtatattttagtttagtt 8833982  T

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