View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9762_low_3 (Length: 367)
Name: NF9762_low_3
Description: NF9762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9762_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 8 - 351
Target Start/End: Original strand, 33993485 - 33993828
Alignment:
| Q |
8 |
aagcagagagcaagaacaagattattgcttaccttgcagcagtttcaatttcaatacatgtttttatgtcatggcttttaactgtgaggttcaagtttgg |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33993485 |
aagcacagagcaagaacaagattattgcttaccttgcagcagtttcaatttcaatacatgtttttatgtcatggcttttaactgtgaggttcaagtttgg |
33993584 |
T |
|
| Q |
108 |
ccttaatggtgcaatgacatcaatccttttggcttattggatcccaaatttgggccagcttgtttttatcatgacaaaatgtcctgatacatggaagggt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33993585 |
ccttaatggtgcaatgacatcaatccttttggcttattggatacccaatttgggtcagcttgtttttatcatgaccaaatgtcctgatacatggaagggt |
33993684 |
T |
|
| Q |
208 |
ttttcatttttggctttcaaagatctttggcctgttatcaagctttctttgtcttctggagctatgttatggtaagaatttcggtaattttcataatcaa |
307 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33993685 |
ttttcatttttggccttcaaagatctttggcctgttatcaagctttctttgtcttctggagctatgttatggtaagaatttcagtaattttcataatcaa |
33993784 |
T |
|
| Q |
308 |
tttttaagattatgcatggtttgtaatcaaagtgtgtttggatg |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33993785 |
tttttaagattatgcatggtttgtaatcaaagtgtgtttggatg |
33993828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 33983812 - 33984115
Alignment:
| Q |
8 |
aagcagagagcaagaacaagattattgcttaccttgcagcagtttcaatttcaatacatgtttttatgtcatggcttttaactgtgaggttcaagtttgg |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
33983812 |
aagcacagagcaagaacaagattattgcttaccttgcagcagtttcaatttcaatacatgtttttatgtcatggcttttaactgttaagttcaagtttgg |
33983911 |
T |
|
| Q |
108 |
ccttaatggtgcaatgacatcaatccttttggcttattggatcccaaatttgggccagcttgtttttatcatgacaaaatgtcctgatacatggaagggt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33983912 |
ggttaatggtgcaatgacatcaatccttttggcttattggatacccaatttgggtcagcttgtttttatcatgaccaaatgtcctgatacatggaagggt |
33984011 |
T |
|
| Q |
208 |
ttttcatttttggctttcaaagatctttggcctgttatcaagctttctttgtcttctggagctatgttatggtaagaatttcggtaattttcataatcaa |
307 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| | |||||| ||||||| |
|
|
| T |
33984012 |
ttctcatttttggccttcaaagatctttggcctgttatcaagctttctttgtcttctggagttatgttatggtaagagtttgagcaatttttgtaatcaa |
33984111 |
T |
|
| Q |
308 |
tttt |
311 |
Q |
| |
|
|||| |
|
|
| T |
33984112 |
tttt |
33984115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 34015438 - 34015501
Alignment:
| Q |
191 |
ctgatacatggaagggtttttcatttttggctttcaaagatctttggcctgttatcaagctttc |
254 |
Q |
| |
|
||||||| ||||| ||||| |||||||| |||||| ||||||||||||||||| |||||||||| |
|
|
| T |
34015438 |
ctgatacttggaaaggtttctcatttttagctttccaagatctttggcctgttgtcaagctttc |
34015501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 34005579 - 34005646
Alignment:
| Q |
187 |
tgtcctgatacatggaagggtttttcatttttggctttcaaagatctttggcctgttatcaagctttc |
254 |
Q |
| |
|
|||||||| || ||||| ||||| |||||||| || |||||||| |||||||||||| |||| ||||| |
|
|
| T |
34005579 |
tgtcctgaaacttggaatggtttctcatttttagcattcaaagacctttggcctgttgtcaaactttc |
34005646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 287
Target Start/End: Complemental strand, 9237496 - 9237379
Alignment:
| Q |
170 |
tttttatcatgacaaaatgtcctgatacatggaagggtttttcatttttggctttcaaagatctttggcctgttatcaagctttctttgtcttctggagc |
269 |
Q |
| |
|
|||| ||||||| ||||||||||||||| ||||||||||| ||| | ||||||||||||||||||||||||||| | ||||| ||| | || ||||||| |
|
|
| T |
9237496 |
ttttcatcatgaaaaaatgtcctgatacttggaagggtttctcaatattggctttcaaagatctttggcctgttgtaaagctctctgtctcatctggagt |
9237397 |
T |
|
| Q |
270 |
tatgttatggtaagaatt |
287 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
9237396 |
catgttgtggtaagaatt |
9237379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 170 - 287
Target Start/End: Complemental strand, 9217988 - 9217871
Alignment:
| Q |
170 |
tttttatcatgacaaaatgtcctgatacatggaagggtttttcatttttggctttcaaagatctttggcctgttatcaagctttctttgtcttctggagc |
269 |
Q |
| |
|
|||| ||||||| |||||||||||| || ||||||||||| ||| ||||||||||||||||||||||||| ||| | |||| ||||| || |||||| |
|
|
| T |
9217988 |
ttttcatcatgaaaaaatgtcctgaaacttggaagggtttctcaattttggctttcaaagatctttggccagttgtgaagcaatctttctcatctggaat |
9217889 |
T |
|
| Q |
270 |
tatgttatggtaagaatt |
287 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
9217888 |
catgttgtggtaagaatt |
9217871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University