View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9762_low_4 (Length: 362)
Name: NF9762_low_4
Description: NF9762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9762_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 47079064 - 47078713
Alignment:
| Q |
1 |
ggcaatgaataatgtgtatgtatgtaatgtgatgaaggaagaagttgtggagactttatttatagtgaaacgactgattataacgccgttacatataaag |
100 |
Q |
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| T |
47079064 |
ggcaatgaataatgtgtatata----atgtgatgaaggaagaagttgtggagactttatttatagtgaaacgactgattataacgccgttacatataaag |
47078969 |
T |
|
| Q |
101 |
tgtttatttgaaaacgtcaacacttgttttgttaccatttgagtgagttgagacttgagactttacttaacagtgctcttactttaggtcaatgaatgtc |
200 |
Q |
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| T |
47078968 |
tgtttatttgaaaacgtcaacacttgttttgttaccatttgagtgagttgagacttgagactttacttaacagtgctcttactttaggtcaatgaatgtc |
47078869 |
T |
|
| Q |
201 |
ttaaaatggctggtccccacataacggaaaacgccgactttctgctatattattattctgctatttaagttaagtactcgtatataattacctgt----- |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47078868 |
ttaaaatggctggtccccacataacggaaaacgccgactttctgctatattattattctgctatttaagttaagtactcgtatataattacctgtcttac |
47078769 |
T |
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| Q |
296 |
cttaggatttatatttgaaagggatatgggctagatgttgcacctatttccccttt |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47078768 |
cttaggatttatatttgaaagggatatgggctagatgttgcacctatttccccttt |
47078713 |
T |
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