View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9762_low_5 (Length: 344)
Name: NF9762_low_5
Description: NF9762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9762_low_5 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 90 - 344
Target Start/End: Complemental strand, 28804332 - 28804078
Alignment:
| Q |
90 |
tcattaagaagaaagattcacattctcttaagttactcataagtcagaagttaaacatgcattaccaacttaactagtccaacacaatatttacaagatt |
189 |
Q |
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| T |
28804332 |
tcattaagaagaaagattcacattctcttaagttactcataagtcataagttaaacatgcattaccaacttaactagtcctacacaatatttacaagatt |
28804233 |
T |
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| Q |
190 |
acaacatgttgaatctactcctaaaatctccaacacaagcaaagcatagcatcttttcatacacacaaaaacaacataatccacaatttcatcatttccc |
289 |
Q |
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| T |
28804232 |
acaacatgttgaatctactcctaaaatctccaacacaagcaaagcatagcatcttttcatacacataaaaacaacataatccacaatttcatcatttccc |
28804133 |
T |
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| Q |
290 |
ccaaaatacacttcaaattaggttttcacatttccacttccacttcttctggatc |
344 |
Q |
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| T |
28804132 |
ccaaaatacacttcaaattaggttttcacatttccacttccatttcttctggatc |
28804078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 38
Target Start/End: Complemental strand, 28804430 - 28804400
Alignment:
| Q |
8 |
aatcagagaccttagtattgaatgaacaatc |
38 |
Q |
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| T |
28804430 |
aatcagagaccttagtattgaatgaacaatc |
28804400 |
T |
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