View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9762_low_6 (Length: 331)
Name: NF9762_low_6
Description: NF9762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9762_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 10867971 - 10867658
Alignment:
| Q |
1 |
aacaactacaaggaatgaatattgatcatgatgataagtccaagattatttatctcgcacttgtggtatctacatataacatatgtacaactcatgaagc |
100 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10867971 |
aacaaatacaagcaatgaatattgatcatgatgataagtacaagattatttatctcgcacttgtggtatctacatataacatatgtacaactcatgaagc |
10867872 |
T |
|
| Q |
101 |
aactttggtgacatctttatttgatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctctcctgcaagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10867871 |
aactttggtgacatctttatttgatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctctcctgcaagg |
10867772 |
T |
|
| Q |
201 |
actgaaccagctactatagttgccagttgcctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaagctgattgcg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10867771 |
actgaaccagctactatagttgccagttgcctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaagctgattgcg |
10867672 |
T |
|
| Q |
301 |
acgcaagttgtgtg |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10867671 |
acgcaagttgtgtg |
10867658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 10886398 - 10886711
Alignment:
| Q |
1 |
aacaactacaaggaatgaatattgatcatgatgataagtccaagattatttatctcgcacttgtggtatctacatataacatatgtacaactcatgaagc |
100 |
Q |
| |
|
||||| |||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10886398 |
aacaaatacaagcaatgaatattgatcatgatggtaagtacaagattatttatctcgcacttgtggtatctacatataacctatgtacaactcatgaagc |
10886497 |
T |
|
| Q |
101 |
aactttggtgacatctttatttgatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctctcctgcaagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10886498 |
aactttggtgacatctttatttgatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctctcctgcaagg |
10886597 |
T |
|
| Q |
201 |
actgaaccagctactatagttgccagttgcctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaagctgattgcg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10886598 |
actgaaccagctactatagttgccagttgcctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaagctgattgcg |
10886697 |
T |
|
| Q |
301 |
acgcaagttgtgtg |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10886698 |
acgcaagttgtgtg |
10886711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 91 - 314
Target Start/End: Original strand, 10872431 - 10872654
Alignment:
| Q |
91 |
ctcatgaagcaactttggtgacatctttatttgatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctc |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10872431 |
ctcatgaagcaactttggtgacatctttattcgatctgttgtatttcatgtggcttttaacaagctgcccggctgcaattgcagacatgagtgagagctc |
10872530 |
T |
|
| Q |
191 |
tcctgcaaggactgaaccagctactatagttgccagttgcctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaa |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10872531 |
tcctgcaaggactgaaccagctactatagttgccagttgcctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaa |
10872630 |
T |
|
| Q |
291 |
gctgattgcgacgcaagttgtgtg |
314 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
10872631 |
gctgattgcgacgcaagttgtgtg |
10872654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 91 - 314
Target Start/End: Original strand, 10877502 - 10877725
Alignment:
| Q |
91 |
ctcatgaagcaactttggtgacatctttatttgatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctc |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10877502 |
ctcatgaagcaactttggtgacatctttattcgatctgttgtatttcatgtggcttttaacaagctgcccggctgcaattgcagacatgagtgagagctc |
10877601 |
T |
|
| Q |
191 |
tcctgcaaggactgaaccagctactatagttgccagttgcctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaa |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10877602 |
tcctgcaaggactgaaccagctactatagttgccagttgcctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaa |
10877701 |
T |
|
| Q |
291 |
gctgattgcgacgcaagttgtgtg |
314 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
10877702 |
gctgattgcgacgcaagttgtgtg |
10877725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 91 - 314
Target Start/End: Original strand, 10882573 - 10882796
Alignment:
| Q |
91 |
ctcatgaagcaactttggtgacatctttatttgatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctc |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10882573 |
ctcatgaagcaactttggtgacatctttattcgatctgttgtatttcatgtggcttttaacaagctgcccggctgcaattgcagacatgagtgagagctc |
10882672 |
T |
|
| Q |
191 |
tcctgcaaggactgaaccagctactatagttgccagttgcctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaa |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10882673 |
tcctgcaaggactgaaccagctactatagttgccagttgcctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaa |
10882772 |
T |
|
| Q |
291 |
gctgattgcgacgcaagttgtgtg |
314 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
10882773 |
gctgattgcgacgcaagttgtgtg |
10882796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 91 - 313
Target Start/End: Complemental strand, 39677575 - 39677353
Alignment:
| Q |
91 |
ctcatgaagcaactttggtgacatctttatttgatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctc |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
39677575 |
ctcatgaagcaactttggtgacatctttattagatctgttgtatttcatgtggcttttaacaagttgaccagctgcaattgcagacatgagtgaaagctc |
39677476 |
T |
|
| Q |
191 |
tcctgcaaggactgaaccagctactatagttgccagttgcctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaa |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| || |||||||||||| |||||||||||||||| ||||| ||||||||||| |||||| |
|
|
| T |
39677475 |
tcctgcaaggactgaaccagctactatagttgccaattgcctagagtttgctcctggactctctttactagctcccttaactccaagtaaattaagacaa |
39677376 |
T |
|
| Q |
291 |
gctgattgcgacgcaagttgtgt |
313 |
Q |
| |
|
|||||||| || ||||||||||| |
|
|
| T |
39677375 |
gctgattgagatgcaagttgtgt |
39677353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 91 - 314
Target Start/End: Complemental strand, 10048529 - 10048306
Alignment:
| Q |
91 |
ctcatgaagcaactttggtgacatctttatttgatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctc |
190 |
Q |
| |
|
||||||||| ||||||||||||||||||| | ||||| ||||||||||||||||| || ||||| ||||| ||||||||||||||||| |||||||| || |
|
|
| T |
10048529 |
ctcatgaagtaactttggtgacatctttactagatctattgtatttcatgtggctctttacaagctgcccagctgcaattgcagacataagtgagagttc |
10048430 |
T |
|
| Q |
191 |
tcctgcaaggactgaaccagctactatagttgccagttgcctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaa |
290 |
Q |
| |
|
||||||||| |||||||| ||||| |||||||||| |||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||| | |||| |
|
|
| T |
10048429 |
tcctgcaagaactgaaccggctacaatagttgccaattgcctagaatttgctcctggagtttctttactagcacccttaacaccaagtaaattcaaacaa |
10048330 |
T |
|
| Q |
291 |
gctgattgcgacgcaagttgtgtg |
314 |
Q |
| |
|
|||||||| || ||||| |||||| |
|
|
| T |
10048329 |
gctgattgtgatgcaagctgtgtg |
10048306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 37950744 - 37950688
Alignment:
| Q |
122 |
tgatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacat |
178 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||| | ||||| |||||||| |
|
|
| T |
37950744 |
tgatctgttgtatttcatgtggcttttgactagttgccctgaagcaatggcagacat |
37950688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 123 - 313
Target Start/End: Original strand, 30707493 - 30707683
Alignment:
| Q |
123 |
gatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctctcctgcaaggactgaaccagctactatagttg |
222 |
Q |
| |
|
|||||||| ||||||||||| || ||||| ||||| || ||||||||||||||||||||||| ||||| || ||||| || ||||||||||| || || | |
|
|
| T |
30707493 |
gatctgttatatttcatgtgactcttaactagttgtccagctgcaattgcagacatgagtgatagctcgccggcaagtaccgaaccagctacgatggtgg |
30707592 |
T |
|
| Q |
223 |
ccagttgcctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaagctgattgcgacgcaagttgtgt |
313 |
Q |
| |
|
||| | |||| | |||||| ||||||| ||| | | || || ||||||||||||||||| ||||||||||| || || ||||||||||| |
|
|
| T |
30707593 |
ccaatagcctagcatttgcacctggagattctgtgttggcgcccttaacaccaagtaaattaagacaagctgactgagatgcaagttgtgt |
30707683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University