View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9763_high_1 (Length: 577)

Name: NF9763_high_1
Description: NF9763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9763_high_1
NF9763_high_1
[»] chr2 (5 HSPs)
chr2 (19-571)||(14735272-14735820)
chr2 (103-210)||(14742176-14742283)
chr2 (454-505)||(17303234-17303285)
chr2 (140-204)||(14997273-14997337)
chr2 (454-505)||(5887909-5887960)
[»] chr7 (6 HSPs)
chr7 (208-505)||(44629261-44629550)
chr7 (476-550)||(47520480-47520555)
chr7 (256-400)||(26074991-26075141)
chr7 (256-400)||(26098778-26098928)
chr7 (398-504)||(8061304-8061412)
chr7 (274-385)||(44598584-44598696)
[»] chr3 (3 HSPs)
chr3 (208-550)||(4221063-4221403)
chr3 (208-247)||(145493-145532)
chr3 (256-385)||(29438422-29438550)
[»] chr1 (3 HSPs)
chr1 (216-550)||(23825919-23826242)
chr1 (308-400)||(10370929-10371022)
chr1 (208-247)||(14876805-14876844)
[»] chr6 (2 HSPs)
chr6 (223-381)||(32786643-32786794)
chr6 (256-340)||(14533700-14533784)
[»] chr5 (5 HSPs)
chr5 (208-346)||(32633011-32633143)
chr5 (86-204)||(29465200-29465318)
chr5 (454-542)||(15974128-15974217)
chr5 (208-252)||(16717199-16717243)
chr5 (208-252)||(19645452-19645496)
[»] chr4 (8 HSPs)
chr4 (270-400)||(46851937-46852068)
chr4 (208-247)||(50070187-50070226)
chr4 (454-497)||(52797844-52797887)
chr4 (209-247)||(33226285-33226323)
chr4 (256-297)||(2930410-2930451)
chr4 (468-505)||(46852133-46852170)
chr4 (454-533)||(26494424-26494504)
chr4 (256-320)||(52490263-52490327)
[»] scaffold0325 (1 HSPs)
scaffold0325 (209-247)||(19783-19821)
[»] chr8 (2 HSPs)
chr8 (208-345)||(24888009-24888140)
chr8 (467-550)||(27084455-27084539)
[»] scaffold0060 (1 HSPs)
scaffold0060 (212-248)||(35934-35970)


Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 19 - 571
Target Start/End: Original strand, 14735272 - 14735820
Alignment:
Q  19 acaataaattgcagaagtacttgcacttgcctcacaagatatttttgaaaaatggcacatgagttctgcttgcatttcttgtgaagcatgttgcagcggc 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14735272 acaataaattgcacaagtacttgcacttgcctcacaagatat-------aaatggcacatgagttctgcttgcatttcttgtgaagcatgttgcagcggc 14735364  T
Q  119 ttcttagatgcagtatgagtattctcccttcctttgtttttgcaatcattcttttgatcatcagtggattggtaaaactgttcaacctctttgttggggg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||    
T  14735365 ttcttagatgcagtatgagtattctcccttcctttgtttttgcaatcattcttttgatcatcagtggattggtaaaactgttcaacctctttatt-aggg 14735463  T
Q  219 tgctaaacttctatgaaatatatattaaacggtaacagtttcaagaagtaacaataattaataactggcctagtgatataaattgctttaaaggagcaag 318  Q
    |||||||||| |||| ||||||||||||| || ||| |||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  14735464 tgctaaacttttatggaatatatattaaaaggaaacggtttcaagaaataacaataattaataactgacctagtgatataaattgttttaaaggagcaag 14735563  T
Q  319 aagatgtggattggaatccccttaaaaagg---ttgtttttaataaaatatgtaaaagtagaagattaaaaatgtaataagaagaagatgtgtaagtgtt 415  Q
    |||||||||||| ||||||||||||||| |   || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14735564 aagatgtggattcgaatccccttaaaaacgtttttttttttaataaaatatgtaaaagtagaagattaaatatgtaataagaagaagatgtgtaagtgtt 14735663  T
Q  416 gaaccaacaacctttaacaacttacagtactccattttcactacaacaaccaaattctaattgatataatacacctaatatagtatataacaaaaatttg 515  Q
    |||||||||||||||||||| ||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  14735664 gaaccaacaacctttaacaatttacagtaccccatttccacaacaacaaccaaattctaattgatataatacacctaatatagtatataagaaaaatctg 14735763  T
Q  516 ggg-atgtcatggcccctgtctgtccctaaagagattcaccaatgctcctttgcttc 571  Q
    ||| ||| |||||||||||||||  |||||||| || ||||| || |||||||||||    
T  14735764 gggaatgccatggcccctgtctgatcctaaagaaatccaccagtgatcctttgcttc 14735820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 103 - 210
Target Start/End: Original strand, 14742176 - 14742283
Alignment:
Q  103 agcatgttgcagcggcttcttagatgcagtatgagtattctcccttcctttgtttttgcaatcattcttttgatcatcagtggattggtaaaactgttca 202  Q
    |||| |||||||||||||||||||| ||||  ||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14742176 agcacgttgcagcggcttcttagatccagtcggagcattctccctgcctttgtttctgcaatcattcttttgatcatcagtggattggtaaaactgttca 14742275  T
Q  203 acctcttt 210  Q
    ||||||||    
T  14742276 acctcttt 14742283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 454 - 505
Target Start/End: Original strand, 17303234 - 17303285
Alignment:
Q  454 cactacaacaaccaaattctaattgatataatacacctaatatagtatataa 505  Q
    ||||||||||||| |||| | |||||||| ||||||||||||||||||||||    
T  17303234 cactacaacaaccgaattgttattgatattatacacctaatatagtatataa 17303285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 14997337 - 14997273
Alignment:
Q  140 ttctcccttcctttgtttttgcaatcattcttttgatcatcagtggattggtaaaactgttcaac 204  Q
    |||||| | ||||||  |||||||||||||| |||| |||||||||||| ||||||||| |||||    
T  14997337 ttctccttgcctttgagtttgcaatcattctgttgaacatcagtggatttgtaaaactgctcaac 14997273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 505
Target Start/End: Complemental strand, 5887960 - 5887909
Alignment:
Q  454 cactacaacaaccaaattctaattgatataatacacctaatatagtatataa 505  Q
    |||| ||||||||||||| | |||||||| ||||||||||| ||||||||||    
T  5887960 cactgcaacaaccaaattattattgatattatacacctaatgtagtatataa 5887909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 208 - 505
Target Start/End: Complemental strand, 44629550 - 44629261
Alignment:
Q  208 tttgttgggggtgctaaacttctatgaaatatatattaaacggtaacagtttcaagaagtaacaataattaataactggcctagtgatataaattgcttt 307  Q
    ||||| |||||||| ||||||||||| |||||||||||||||||      |||||||||  |||||||||| |||||| ||||||| ||||||||| ||     
T  44629550 tttgtagggggtgccaaacttctatggaatatatattaaacggt------ttcaagaagatacaataattagtaactgacctagtggtataaattgtttg 44629457  T
Q  308 aaaggagcaagaagatgtggattggaatccccttaaaaaggttgtttttaataaaatatgtaaaagtagaagattaaaaatgtaataagaagaagatgtg 407  Q
    ||| || ||||| ||||||| || ||||||||| ||||| ||| ||||||||| |||||||||||||||||||||||| |||||| |||||||   ||||    
T  44629456 aaaagaacaagaggatgtgggtttgaatcccctcaaaaacgttttttttaatacaatatgtaaaagtagaagattaaatatgtaaaaagaaga---tgtg 44629360  T
Q  408 taagtgttgaaccaacaacctttaacaacttacagtactccattttc-actacaacaaccaaattctaattgatataatacacctaatatagtatataa 505  Q
     ||||||| ||||  | |||||||  || |||||| || ||  |||| ||| ||||| || || | |||||||||||||||||||||||||||||||||    
T  44629359 gaagtgtttaaccggcgacctttagtaaattacagcacccccctttccactgcaacagccgaaatttaattgatataatacacctaatatagtatataa 44629261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 476 - 550
Target Start/End: Original strand, 47520480 - 47520555
Alignment:
Q  476 ttgatataatacacctaatatagtatataac-aaaaatttggggatgtcatggcccctgtctgtccctaaagagat 550  Q
    ||||||||||||| ||||||||||||||||| |||| || ||||||||||||||||| | |||||||| |||||||    
T  47520480 ttgatataatacatctaatatagtatataacgaaaacttgggggatgtcatggccccagcctgtccctgaagagat 47520555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 256 - 400
Target Start/End: Original strand, 26074991 - 26075141
Alignment:
Q  256 gtttcaagaagtaacaataattaataactggcctagtgatataaattgctttaaaggagcaagaagatgtggattggaatccccttaaaaagg-----tt 350  Q
    ||||||||||||| |||||||| ||||| ||||||||| |||||||   ||||||||||||||| | ||||| || ||||| | | ||||| |     ||    
T  26074991 gtttcaagaagtatcaataatttataaccggcctagtggtataaatccttttaaaggagcaagagggtgtgggtttgaatcacttcaaaaatgttttttt 26075090  T
Q  351 gtttttaata-aaatatgtaaaagtagaagattaaaaatgtaataagaaga 400  Q
     ||||||||| |||||| |||  |||||||||| || ||||||||||||||    
T  26075091 ttttttaatacaaatatataatcgtagaagattgaatatgtaataagaaga 26075141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 256 - 400
Target Start/End: Original strand, 26098778 - 26098928
Alignment:
Q  256 gtttcaagaagtaacaataattaataactggcctagtgatataaattgctttaaaggagcaagaagatgtggattggaatccccttaaaaagg-----tt 350  Q
    ||||||||||||| |||||||| ||||| ||||||||| |||||||   ||||||||||||||| | ||||| || ||||| | | ||||| |     ||    
T  26098778 gtttcaagaagtatcaataatttataaccggcctagtggtataaatccttttaaaggagcaagagggtgtgggtttgaatcacttcaaaaatgttttttt 26098877  T
Q  351 gtttttaata-aaatatgtaaaagtagaagattaaaaatgtaataagaaga 400  Q
     ||||||||| |||||| |||  |||||||||| || ||||||||||||||    
T  26098878 ttttttaatacaaatatataatcgtagaagattgaatatgtaataagaaga 26098928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 504
Target Start/End: Complemental strand, 8061412 - 8061304
Alignment:
Q  398 agaagatgtgtaagtgttgaacca--acaacctttaacaacttacagtactccattttcactacaacaaccaaattctaattgatataatacacctaata 495  Q
    |||||| ||| ||||||||||||   |||||||||| ||| |||  |||| |  ||| |||| ||||| ||||| ||| |||||||||||||||||||||    
T  8061412 agaagacgtggaagtgttgaacctgcacaacctttagcaatttatggtaccctctttccactgcaacatccaaaatctgattgatataatacacctaata 8061313  T
Q  496 tagtatata 504  Q
    |||||||||    
T  8061312 tagtatata 8061304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 385
Target Start/End: Complemental strand, 44598696 - 44598584
Alignment:
Q  274 aattaataactggcctagtgatataaattgctttaaaggagcaagaagatgtggattggaatccccttaaaaaggttgttttt-aataaaatatgtaaaa 372  Q
    |||||||| |||||| |||| |||||| ||  |||||||||||||| || |||| || |||||||||  ||| | || ||||| |||| |||||| || |    
T  44598696 aattaatagctggccaagtggtataaaatgtgttaaaggagcaagaggaagtgggttcgaatcccctcgaaacgtttttttttaaatacaatatgcaata 44598597  T
Q  373 gtagaagattaaa 385  Q
     ||||||||||||    
T  44598596 atagaagattaaa 44598584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 208 - 550
Target Start/End: Complemental strand, 4221403 - 4221063
Alignment:
Q  208 tttgttgggggtgctaaacttctatgaaatatatattaaacggtaacagtttcaagaagtaacaataattaataactggcctagtgatataaattgcttt 307  Q
    |||||||||||||| ||||||||||||||||||||||||||      ||||||||||||||| ||||||||||||| | ||||||| ||||||||  ||     
T  4221403 tttgttgggggtgccaaacttctatgaaatatatattaaac------agtttcaagaagtaataataattaataaccgacctagtggtataaattttttg 4221310  T
Q  308 aaaggagcaagaagatgtggattggaa-tccccttaaaaaggt----tgtttttaataaaatatgtaaaagtagaagattaaaaatgtaataagaagaag 402  Q
    ||| |||||||| ||||||| || ||| |||    ||||| ||    | ||||||||| ||| ||||||||||||||| |||| ||| || ||||||| |    
T  4221309 aaaagagcaagaggatgtgggttcgaaatccaaaaaaaaatgtgttttttttttaatacaatttgtaaaagtagaaga-taaatatgcaaaaagaagatg 4221211  T
Q  403 atgtgtaagtgttgaaccaacaacctttaacaacttacagtactccattttcactacaacaaccaaattctaattgatataatacacctaatatagtata 502  Q
     |||| ||||||||||||| |||| |||| ||| ||||   || |||||| |||| ||||| |  || |||||||||| ||  |||||||||| |  |||    
T  4221210 -tgtggaagtgttgaaccagcaacttttagcaatttacgacaccccatttccactgcaacagctgaaatctaattgatttatgacacctaatacaaaata 4221112  T
Q  503 taa-caaaaatttggggatgtcatggcccctgtctgtccctaaagagat 550  Q
    |||  ||||  | ||||||| ||||||||||| ||||||||||||||||    
T  4221111 taaggaaaacctgggggatgccatggcccctgcctgtccctaaagagat 4221063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 145532 - 145493
Alignment:
Q  208 tttgttgggggtgctaaacttctatgaaatatatattaaa 247  Q
    |||||||||||||| ||||||||||| |||||||||||||    
T  145532 tttgttgggggtgccaaacttctatgtaatatatattaaa 145493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 385
Target Start/End: Complemental strand, 29438550 - 29438422
Alignment:
Q  256 gtttcaagaagtaacaataattaataactggcctagtgatataaattgctttaaaggagcaagaagatgtggattggaatccccttaaaaaggttgtttt 355  Q
    |||||||| | || ||||||||||||  ||||| |||  |||||| || ||||||||||||||| || |||| || |||| |||||  ||| ||| ||||    
T  29438550 gtttcaagtattatcaataattaatagttggccaagttgtataaaatgttttaaaggagcaagaggaagtgggtttgaat-ccctttgaaacgttatttt 29438452  T
Q  356 taataaaatatgtaaaagtagaagattaaa 385  Q
     |||| |||||| || | ||||||||||||    
T  29438451 aaatacaatatgcaataatagaagattaaa 29438422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 216 - 550
Target Start/End: Complemental strand, 23826242 - 23825919
Alignment:
Q  216 gggtgctaaacttctatgaaatatatattaaacggtaacagtttcaagaagtaacaataattaataactggcctagtgatataaattgctttaaaggagc 315  Q
    |||||| ||||||||||| ||||||||||||||| |      ||||||||||||||||||||||||||||| |||||| ||||||||  || ||||||||    
T  23826242 gggtgccaaacttctatggaatatatattaaacgat------ttcaagaagtaacaataattaataactggtctagtggtataaattatttgaaaggagc 23826149  T
Q  316 aagaagatgtggattggaatccccttaaaaaggttgtttttaataaaatatgtaaaagtagaagattaaaaatgtaataagaagaagatgtgtaagtgtt 415  Q
    ||||   ||| | || ||||| | | |||||  || ||| ||||| || ||| |||| |||||||| ||| |||||| ||||||| ||   | || ||||    
T  23826148 aagagcgtgtaggtttgaatctcatcaaaaacattttttataatacaa-atggaaaaatagaagat-aaatatgtaaaaagaagatga---gaaaatgtt 23826054  T
Q  416 gaaccaacaacctttaacaacttacagtactccattttcactacaacaaccaaattctaattgatataatacacctaatatagtatataacaaaaatttg 515  Q
    ||||| ||||| |||||| | |||||| ||  ||| | ||||| ||||||  || | |||||| ||||||||||||||||||||||||||  ||||  ||    
T  23826053 gaaccgacaac-tttaacgatttacagcacctcatgtccactataacaactgaagtataattggtataatacacctaatatagtatataaagaaaacctg 23825955  T
Q  516 g-ggatgtcatggcccctgtctgtccctaaagagat 550  Q
    | ||||| |||||||||||  |||||||||||||||    
T  23825954 gaggatgacatggcccctgcttgtccctaaagagat 23825919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 308 - 400
Target Start/End: Complemental strand, 10371022 - 10370929
Alignment:
Q  308 aaaggagcaagaagatgtggattggaatccccttaaaaaggttgttttt-aataaaatatgtaaaagtagaagattaaaaatgtaataagaaga 400  Q
    |||||||||||  ||||||| ||  |||||||| ||||| ||| ||||| |||| |||||| ||||||| ||||||||| |||||| |||||||    
T  10371022 aaaggagcaagtggatgtgggttcaaatcccctcaaaaatgttttttttaaatataatatggaaaagtaaaagattaaatatgtaaaaagaaga 10370929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 14876805 - 14876844
Alignment:
Q  208 tttgttgggggtgctaaacttctatgaaatatatattaaa 247  Q
    |||||||||||||| ||||||||||| |||||||||||||    
T  14876805 tttgttgggggtgccaaacttctatgtaatatatattaaa 14876844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 223 - 381
Target Start/End: Original strand, 32786643 - 32786794
Alignment:
Q  223 aaacttctatgaaatatatattaaacggtaacagtttcaagaagtaacaataattaataactggcctagtgatataaattgctttaaaggagcaagaaga 322  Q
    ||||||||||| |||||||||||||||||      |||||||||||| |||||||||||| |||| ||||  ||||||||| || |||| ||||||| ||    
T  32786643 aaacttctatggaatatatattaaacggt------ttcaagaagtaaaaataattaataattggcttagtcgtataaattgtttcaaagaagcaagagga 32786736  T
Q  323 tgtggattggaatccccttaaaaaggttgtttttaataaaatatgtaaaagtagaagat 381  Q
    ||||| || |||||| ||| |||| ||| ||||||||| ||||| ||||||||||||||    
T  32786737 tgtgggtttgaatcctctttaaaacgtt-tttttaatacaatatctaaaagtagaagat 32786794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 14533784 - 14533700
Alignment:
Q  256 gtttcaagaagtaacaataattaataactggcctagtgatataaattgctttaaaggagcaagaagatgtggattggaatcccct 340  Q
    |||||||| | || |||||||||||| |||| | |||| |||||| || ||||||||||||||| || || | || |||||||||    
T  14533784 gtttcaagtattatcaataattaatagctggacaagtggtataaaatgttttaaaggagcaagatgaagtcggtttgaatcccct 14533700  T

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Target: chr5 (Bit Score: 56; Significance: 6e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 208 - 346
Target Start/End: Original strand, 32633011 - 32633143
Alignment:
Q  208 tttgttgggggtgctaaacttctatgaaatatatattaaacggtaacagtttcaagaagtaacaataattaataactggcctagtgatataaattgcttt 307  Q
    |||||||||||||| || | |||||| |||||||||||||||||      |||||||||||||||||||||||||| || |||||| ||||||||| ||     
T  32633011 tttgttgggggtgccaatcatctatgtaatatatattaaacggt------ttcaagaagtaacaataattaataaccggtctagtggtataaattgtttg 32633104  T
Q  308 aaaggagcaagaagatgtggattggaatccccttaaaaa 346  Q
    |||| |||||||  |||||| || ||||||||| |||||    
T  32633105 aaagaagcaagagaatgtgggttcgaatcccctaaaaaa 32633143  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 86 - 204
Target Start/End: Complemental strand, 29465318 - 29465200
Alignment:
Q  86 gcttgcatttcttgtgaagcatgttgcagcggcttcttagatgcagtatgagtattctcccttcctttgtttttgcaatcattcttttgatcatcagtgg 185  Q
    |||||||| |||| ||||||| ||| || || |||||||||| | ||| |||  |||||||| ||||||| |||||||||||||| |||| |||||||||    
T  29465318 gcttgcatatcttctgaagcacgtttcaacgccttcttagatccggtaggaggcttctccctgcctttgtatttgcaatcattctgttgaacatcagtgg 29465219  T
Q  186 attggtaaaactgttcaac 204  Q
    ||||||||||||| |||||    
T  29465218 attggtaaaactgctcaac 29465200  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 454 - 542
Target Start/End: Original strand, 15974128 - 15974217
Alignment:
Q  454 cactacaacaaccaaattctaattgatataatacacctaatatagtatataacaaaaat-ttggggatgtcatggcccctgtctgtccct 542  Q
    |||||||||||| ||||| | ||||| || ||||||||||||||||||||||  ||||| | ||||||| |||||| |||| ||| ||||    
T  15974128 cactacaacaactaaattgttattgaaatcatacacctaatatagtatataaggaaaatctaggggatgccatggcacctgcctgcccct 15974217  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 16717243 - 16717199
Alignment:
Q  208 tttgttgggggtgctaaacttctatgaaatatatattaaacggta 252  Q
    |||||||||||||| |||||| |||| ||||||||||||| ||||    
T  16717243 tttgttgggggtgccaaacttttatggaatatatattaaatggta 16717199  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 19645496 - 19645452
Alignment:
Q  208 tttgttgggggtgctaaacttctatgaaatatatattaaacggta 252  Q
    |||||||||||||| |||||| |||| ||||||||||||| ||||    
T  19645496 tttgttgggggtgccaaacttttatggaatatatattaaatggta 19645452  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 400
Target Start/End: Original strand, 46851937 - 46852068
Alignment:
Q  270 caataattaataactggcctagtgatataaattgctttaaaggagcaagaagatgtggattggaatccccttaaaaaggttgtttttaa-taaaatatgt 368  Q
    |||||||||||||| || | |||| |||||| |  |||||| |||||||  ||||| | ||  |||||||| |||||  || | ||||| || ||||||     
T  46851937 caataattaataaccggtcaagtggtataaaatattttaaatgagcaagtggatgttggtttaaatcccctcaaaaactttttatttaaatacaatatgc 46852036  T
Q  369 aaaagtagaagattaaaaatgtaataagaaga 400  Q
    ||||||||||| |||||||||||| |||||||    
T  46852037 aaaagtagaaggttaaaaatgtaaaaagaaga 46852068  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 50070226 - 50070187
Alignment:
Q  208 tttgttgggggtgctaaacttctatgaaatatatattaaa 247  Q
    |||||||||||||| ||||||||||| |||||||||||||    
T  50070226 tttgttgggggtgccaaacttctatgtaatatatattaaa 50070187  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 497
Target Start/End: Original strand, 52797844 - 52797887
Alignment:
Q  454 cactacaacaaccaaattctaattgatataatacacctaatata 497  Q
    ||||||||||||| |||||| ||||||||| |||||||||||||    
T  52797844 cactacaacaaccgaattcttattgatatattacacctaatata 52797887  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 33226323 - 33226285
Alignment:
Q  209 ttgttgggggtgctaaacttctatgaaatatatattaaa 247  Q
    ||||||||||||| ||||||||||| |||||||||||||    
T  33226323 ttgttgggggtgccaaacttctatgtaatatatattaaa 33226285  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 297
Target Start/End: Original strand, 2930410 - 2930451
Alignment:
Q  256 gtttcaagaagtaacaataattaataactggcctagtgatat 297  Q
    |||||||||||||||||||||||||||| | | |||||||||    
T  2930410 gtttcaagaagtaacaataattaataaccgacgtagtgatat 2930451  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 468 - 505
Target Start/End: Original strand, 46852133 - 46852170
Alignment:
Q  468 aattctaattgatataatacacctaatatagtatataa 505  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  46852133 aattctaattgttataatacacctaatataatatataa 46852170  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 533
Target Start/End: Complemental strand, 26494504 - 26494424
Alignment:
Q  454 cactacaacaaccaaattctaattgatataatacacctaatatagtatataacaaaaat-ttggggatgtcatggcccctg 533  Q
    |||| ||||||| ||||| | ||||| || ||||||||||||||||||||||   |||| | |||||||||||||| ||||    
T  26494504 cactgcaacaactaaattattattgaaattatacacctaatatagtatataagggaaatctgggggatgtcatggcacctg 26494424  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 52490263 - 52490327
Alignment:
Q  256 gtttcaagaagtaacaataattaataactggcctagtgatataaattgctttaaaggagcaagaa 320  Q
    |||||| ||||||||||||| ||||||| || ||||| |||||||||| || |||| | ||||||    
T  52490263 gtttcacgaagtaacaataactaataaccggtctagttatataaattgtttgaaagcatcaagaa 52490327  T

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Target: scaffold0325 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 19783 - 19821
Alignment:
Q  209 ttgttgggggtgctaaacttctatgaaatatatattaaa 247  Q
    ||||||||||||| ||||||||||| |||||||||||||    
T  19783 ttgttgggggtgccaaacttctatgtaatatatattaaa 19821  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 208 - 345
Target Start/End: Original strand, 24888009 - 24888140
Alignment:
Q  208 tttgttgggggtgctaaacttctatgaaatatatattaaacggtaacagtttcaagaagtaacaataattaataactggcctagtgatataaattgcttt 307  Q
    |||||||||||||| ||| || |||| ||||||||||||  |||      |||||| | || |||||||||||| ||||   |||| |||||| || |||    
T  24888009 tttgttgggggtgccaaaattttatggaatatatattaactggt------ttcaagtattatcaataattaatagctggataagtggtataaaatgtttt 24888102  T
Q  308 aaaggagcaagaagatgtggattggaatccccttaaaa 345  Q
    |||||||||||| || |||| || ||||||||| ||||    
T  24888103 aaaggagcaagaggaagtgggtttgaatcccctcaaaa 24888140  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 550
Target Start/End: Original strand, 27084455 - 27084539
Alignment:
Q  467 aaattctaattgatataatacacctaatatagtatataacaaaaattt-ggggatgtcatggcccctgtctgtccctaaagagat 550  Q
    |||| ||| |||| |||||||||||||||||||||||||  ||| ||| ||||||| |||||| |||| ||  ||| ||||||||    
T  27084455 aaatcctagttgaaataatacacctaatatagtatataaggaaactttgggggatgccatggcacctgccttcccccaaagagat 27084539  T

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Target: scaffold0060 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 35970 - 35934
Alignment:
Q  212 ttgggggtgctaaacttctatgaaatatatattaaac 248  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  35970 ttgggggtgccaaacttccatgaaatatatattaaac 35934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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