View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9763_high_12 (Length: 290)

Name: NF9763_high_12
Description: NF9763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9763_high_12
NF9763_high_12
[»] chr1 (2 HSPs)
chr1 (18-280)||(5902528-5902790)
chr1 (18-277)||(5906012-5906271)
[»] chr8 (9 HSPs)
chr8 (18-277)||(2014818-2015074)
chr8 (18-277)||(2018201-2018457)
chr8 (72-277)||(2436818-2437023)
chr8 (18-277)||(1963355-1963611)
chr8 (65-277)||(2011413-2011625)
chr8 (67-280)||(1969007-1969226)
chr8 (67-277)||(2007798-2008008)
chr8 (47-277)||(1965051-1965281)
chr8 (67-277)||(2004418-2004628)
[»] scaffold0184 (1 HSPs)
scaffold0184 (156-232)||(15200-15276)
[»] scaffold0078 (1 HSPs)
scaffold0078 (156-232)||(57568-57644)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 5902528 - 5902790
Alignment:
Q  18 ataaattcttatgggttgaaagagcaccaagtagttcagccagtggtgcatatctttcagcagaaaatgatgttgatctttcacagtttttaccacctgg 117  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  5902528 ataaattcttatgggttgtaagagcaccaagtagttcagccagtggtgcatatctttcagcagaaaatgatgttgatcttttgcagtttttaccacctgg 5902627  T
Q  118 gttcttggagagaaccaaggagcaaggagtggttattccatcatgggcacctcagattgaaatccttagtcacagatcagttggtggattcttgagtcac 217  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  5902628 gttcttggagagaaccaaggagcaagggatggttattccatcatgggcacctcagattgaaacacttagtcacagatcagttggtggattcttgagtcac 5902727  T
Q  218 tgtggctggaattcaatacttgagagcgtgatgcatggtgtgccactaatcacatggcctttg 280  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  5902728 tgtggctggaattcaatccttgagagtgtgatgcatggtgtgccactaatcacatggcctttg 5902790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 5906012 - 5906271
Alignment:
Q  18 ataaattcttatgggttgaaagagcaccaagtagttcagccagtggtgcatatctttcagcagaaaatgatgttgatctttcacagtttttaccacctgg 117  Q
    |||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||| |||| |||||||||||||| ||| |||||||| ||||    
T  5906012 ataaattcttatgggttgtaagagcaccaagtagttcagcatgtggtgcatatctttcagcacaaaacgatgttgatctttcgcaggttttaccatctgg 5906111  T
Q  118 gttcttggagagaaccaaggagcaaggagtggttattccatcatgggcacctcagattgaaatccttagtcacagatcagttggtggattcttgagtcac 217  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  5906112 gttcttggagagaaccaaggagcaaggaatggttattccatcatgggcacctcagattgaaatccttagtcacatatcagttggtggattcttgagtcat 5906211  T
Q  218 tgtggctggaattcaatacttgagagcgtgatgcatggtgtgccactaatcacatggcct 277  Q
    ||||| |||| |||||| |||||||||| |||||||||||||||||||||||||||||||    
T  5906212 tgtggttggagttcaatccttgagagcgcgatgcatggtgtgccactaatcacatggcct 5906271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 2015074 - 2014818
Alignment:
Q  18 ataaattcttatgggttgaaagagcaccaagtagttcagccagtggtgcatatctttcagcagaaaatgatgttgatctttcacagtttttaccacctgg 117  Q
    |||||||||||||||||| |||| ||||||||| | |||||| || ||||||||||||||||     ||||||||| | || ||| ||||||||  | ||    
T  2015074 ataaattcttatgggttgtaagatcaccaagtaatacagccaatgctgcatatctttcagcatc---tgatgttgaccctttacaatttttaccttcagg 2014978  T
Q  118 gttcttggagagaaccaaggagcaaggagtggttattccatcatgggcacctcagattgaaatccttagtcacagatcagttggtggattcttgagtcac 217  Q
    ||||||||||||||| ||||| |||||  |||||||||||||||||||||| |||||| |||||||| ||||||| ||||||||||| ||||||| ||||    
T  2014977 gttcttggagagaacaaaggaacaagggatggttattccatcatgggcaccacagattcaaatccttcgtcacagttcagttggtgggttcttgactcac 2014878  T
Q  218 tgtggctggaattcaatacttgagagcgtgatgcatggtgtgccactaatcacatggcct 277  Q
    ||||| ||||||||||| |||||||| ||| |||||||||||||||||||||||||||||    
T  2014877 tgtggttggaattcaatgcttgagagtgtgttgcatggtgtgccactaatcacatggcct 2014818  T

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Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 2018457 - 2018201
Alignment:
Q  18 ataaattcttatgggttgaaagagcaccaagtagttcagccagtggtgcatatctttcagcagaaaatgatgttgatctttcacagtttttaccacctgg 117  Q
    |||||||||||||||||| |||| ||||||||| | |||||| || ||||||||||||||||     ||||||||| | || ||| ||||||||  | ||    
T  2018457 ataaattcttatgggttgtaagatcaccaagtaatacagccaatgctgcatatctttcagcatc---tgatgttgaccctttacaatttttaccttcagg 2018361  T
Q  118 gttcttggagagaaccaaggagcaaggagtggttattccatcatgggcacctcagattgaaatccttagtcacagatcagttggtggattcttgagtcac 217  Q
    ||||||||||||||  ||||| |||||  |||||||||||||||||||||| |||||| |||||||| ||||||| ||||||||||| ||||||| ||||    
T  2018360 gttcttggagagaaaaaaggaacaagggatggttattccatcatgggcaccacagattcaaatccttcgtcacagttcagttggtgggttcttgactcac 2018261  T
Q  218 tgtggctggaattcaatacttgagagcgtgatgcatggtgtgccactaatcacatggcct 277  Q
    ||||| ||||||||||  |||||||| ||| |||||||||||||||||||||||||||||    
T  2018260 tgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatggcct 2018201  T

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Target: chr8; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 72 - 277
Target Start/End: Original strand, 2436818 - 2437023
Alignment:
Q  72 tttcagcagaaaatgatgttgatctttcacagtttttaccacctgggttcttggagagaaccaaggagcaaggagtggttattccatcatgggcacctca 171  Q
    |||||||| ||||||||||||| | ||  || |||||||||  ||||||| | |||||||||||||| |||||  |||||||||||||||||||||| ||    
T  2436818 tttcagcacaaaatgatgttgaccctttgcaatttttaccatgtgggttcatagagagaaccaaggatcaagggatggttattccatcatgggcaccaca 2436917  T
Q  172 gattgaaatccttagtcacagatcagttggtggattcttgagtcactgtggctggaattcaatacttgagagcgtgatgcatggtgtgccactaatcaca 271  Q
    | || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||| ||| |||||||||||||||||||||||    
T  2436918 ggttcaaatccttagtcacagatcagttggtggtttcttgagtcactgtggctggaattcaacccttgagagtgtggtgcatggtgtgccactaatcaca 2437017  T
Q  272 tggcct 277  Q
    ||||||    
T  2437018 tggcct 2437023  T

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Target: chr8; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 1963355 - 1963611
Alignment:
Q  18 ataaattcttatgggttgaaagagcaccaagtagttcagccagtggtgcatatctttcagcagaaaatgatgttgatctttcacagtttttaccacctgg 117  Q
    |||||||||||||||||| |||||| ||||||||| |||| | || ||||||||||||||||     ||||||||||| || ||||||||||||| ||||    
T  1963355 ataaattcttatgggttgtaagagctccaagtagtacagcaaatgctgcatatctttcagcatc---tgatgttgatcctttacagtttttaccatctgg 1963451  T
Q  118 gttcttggagagaaccaaggagcaaggagtggttattccatcatgggcacctcagattgaaatccttagtcacagatcagttggtggattcttgagtcac 217  Q
    ||| ||||||||||||||||| |||||  ||||| |||||||||||||||| |||||| |||||||||||||||| ||  ||||||| || |||  |||     
T  1963452 gtttttggagagaaccaaggaacaagggatggttgttccatcatgggcaccacagattcaaatccttagtcacagttccattggtgggtttttgtctcat 1963551  T
Q  218 tgtggctggaattcaatacttgagagcgtgatgcatggtgtgccactaatcacatggcct 277  Q
    ||||| ||||||||||  |||||||| ||| || ||||||||||||||||||| ||||||    
T  1963552 tgtggttggaattcaacccttgagagtgtggtgtatggtgtgccactaatcacttggcct 1963611  T

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Target: chr8; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 65 - 277
Target Start/End: Complemental strand, 2011625 - 2011413
Alignment:
Q  65 gcatatctttcagcagaaaatgatgttgatctttcacagtttttaccacctgggttcttggagagaaccaaggagcaaggagtggttattccatcatggg 164  Q
    ||||||||||||||| ||||||||||||||  || ||| ||||||||| ||||||| |||||||||||||| ||| ||||  | || ||| |||||||||    
T  2011625 gcatatctttcagcacaaaatgatgttgatgctttacaatttttaccatctgggtttttggagagaaccaaagaggaaggttttgtcattacatcatggg 2011526  T
Q  165 cacctcagattgaaatccttagtcacagatcagttggtggattcttgagtcactgtggctggaattcaatacttgagagcgtgatgcatggtgtgccact 264  Q
    ||||||||||| ||||||||||||| || |||||||| || ||||||||||||||||| ||||  |||| |||||| || ||| | ||||| ||||||||    
T  2011525 cacctcagattcaaatccttagtcatagttcagttggcgggttcttgagtcactgtggttggagctcaacacttgaaagtgtggttcatggggtgccact 2011426  T
Q  265 aatcacatggcct 277  Q
    |||||||||||||    
T  2011425 aatcacatggcct 2011413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 67 - 280
Target Start/End: Original strand, 1969007 - 1969226
Alignment:
Q  67 atatctttcagcagaaaatgatgttgatctttcacagtttttaccacctgg------gttcttggagagaaccaaggagcaaggagtggttattccatca 160  Q
    |||||||||||||||||||||| ||||   ||  |||||||||||| ||||      |||||||||||||||||||||| ||||  | |||||| |||||    
T  1969007 atatctttcagcagaaaatgatattgacactttgcagtttttaccatctggatctgggttcttggagagaaccaaggagaaaggttttgttattacatca 1969106  T
Q  161 tgggcacctcagattgaaatccttagtcacagatcagttggtggattcttgagtcactgtggctggaattcaatacttgagagcgtgatgcatggtgtgc 260  Q
    ||||| || |||||| ||||||| |||||||  ||| ||||||||||||||| ||| ||||||||||||||||  |||||||| ||| ||||||||||||    
T  1969107 tgggcgccgcagattcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacccttgagagtgtgttgcatggtgtgc 1969206  T
Q  261 cactaatcacatggcctttg 280  Q
    ||||||||||||||||||||    
T  1969207 cactaatcacatggcctttg 1969226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 67 - 277
Target Start/End: Complemental strand, 2008008 - 2007798
Alignment:
Q  67 atatctttcagcagaaaatgatgttgatctttcacagtttttaccacctgggttcttggagagaaccaaggagcaaggagtggttattccatcatgggca 166  Q
    |||||||||||||||||||||| ||||   ||  |||||||||||| |||||||||||||||||||||||||| ||||  | |||||| ||||||||||     
T  2008008 atatctttcagcagaaaatgatattgacactttgcagtttttaccatctgggttcttggagagaaccaaggagaaaggttttgttattacatcatgggcg 2007909  T
Q  167 cctcagattgaaatccttagtcacagatcagttggtggattcttgagtcactgtggctggaattcaatacttgagagcgtgatgcatggtgtgccactaa 266  Q
    || |||||| ||||||| |||||||  ||||||||||| |||||||  || ||||||||||||||||  |||||||| ||| |||| ||||||||  |||    
T  2007908 ccgcagattcaaatcctaagtcacaactcagttggtgggttcttgacgcattgtggctggaattcaacccttgagagtgtggtgcacggtgtgccgttaa 2007809  T
Q  267 tcacatggcct 277  Q
    |||| ||||||    
T  2007808 tcacgtggcct 2007798  T

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Target: chr8; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 47 - 277
Target Start/End: Original strand, 1965051 - 1965281
Alignment:
Q  47 agtagttcagccagtggtgcatatctttcagcagaaaatgatgttgatctttcacagtttttaccacctgggttcttggagagaaccaaggagcaaggag 146  Q
    ||||||||| | ||||  ||||||||||||||| ||||||| | ||| | ||   | ||||||||| ||||||| ||||||||||| |||||| ||||      
T  1965051 agtagttcatctagtgcagcatatctttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggtt 1965150  T
Q  147 tggttattccatcatgggcacctcagattgaaatccttagtcacagatcagttggtggattcttgagtcactgtggctggaattcaatacttgagagcgt 246  Q
    | || ||| |||||||||||||||||||| ||||||||||||| || ||| |||| || ||||||||||||||||| ||||| ||||  ||||| || ||    
T  1965151 ttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgt 1965250  T
Q  247 gatgcatggtgtgccactaatcacatggcct 277  Q
    | ||||||| |||||||||||||||||||||    
T  1965251 ggtgcatggagtgccactaatcacatggcct 1965281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 67 - 277
Target Start/End: Complemental strand, 2004628 - 2004418
Alignment:
Q  67 atatctttcagcagaaaatgatgttgatctttcacagtttttaccacctgggttcttggagagaaccaaggagcaaggagtggttattccatcatgggca 166  Q
    |||| |||||||| ||||||||| |||   ||  |||||||| ||| | |||||||||||||||||||||||| ||||  | || ||| |||||||||      
T  2004628 atatttttcagcacaaaatgatgctgacacttggcagtttttgccatccgggttcttggagagaaccaaggagaaaggttttgtcattacatcatgggtg 2004529  T
Q  167 cctcagattgaaatccttagtcacagatcagttggtggattcttgagtcactgtggctggaattcaatacttgagagcgtgatgcatggtgtgccactaa 266  Q
    || |||||| ||||||| |||||||  ||||| || || ||||||| ||| ||||||||||||||||  || ||||| ||| ||||||||||||||||||    
T  2004528 ccgcagattcaaatcctaagtcacaactcagtcggcgggttcttgactcattgtggctggaattcaaccctagagagtgtggtgcatggtgtgccactaa 2004429  T
Q  267 tcacatggcct 277  Q
    | |||||||||    
T  2004428 taacatggcct 2004418  T

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Target: scaffold0184 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 15276 - 15200
Alignment:
Q  156 catcatgggcacctcagattgaaatccttagtcacagatcagttggtggattcttgagtcactgtggctggaattca 232  Q
    ||||||||||||||||  ||||||| ||||  || || |||||||||||||| || ||||| ||||| |||||||||    
T  15276 catcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtggttggaattca 15200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 57568 - 57644
Alignment:
Q  156 catcatgggcacctcagattgaaatccttagtcacagatcagttggtggattcttgagtcactgtggctggaattca 232  Q
    ||||||||||||||||  ||||||| ||||  || || |||||||||||||| || ||||| ||||| |||||||||    
T  57568 catcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtggttggaattca 57644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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