View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9763_high_18 (Length: 243)
Name: NF9763_high_18
Description: NF9763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9763_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 99 - 225
Target Start/End: Complemental strand, 35073758 - 35073632
Alignment:
| Q |
99 |
ttgcatagcagcagcagcaaagagtttcagaaacacatatcaggtatcaaataacannnnnnnctccttccaacttttgtttttgtgtagctactcaatc |
198 |
Q |
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| T |
35073758 |
ttgcatagcagcagcagcaaagagtttcagaaacacatatcaggtatcaaataacatttttttctccttccaacttttgtttttgtgtagctactcaatc |
35073659 |
T |
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| Q |
199 |
aaactaccaaaatattcgcgacattag |
225 |
Q |
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| T |
35073658 |
aaactaccaaaatattcgcgacattag |
35073632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 35073856 - 35073813
Alignment:
| Q |
1 |
caacatattatgtctgcatgcaactatatactactaataatttt |
44 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35073856 |
caacatattatgtctgcatgcaactatatactactaataatttt |
35073813 |
T |
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