View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9763_high_6 (Length: 354)
Name: NF9763_high_6
Description: NF9763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9763_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 20 - 344
Target Start/End: Complemental strand, 38932848 - 38932520
Alignment:
| Q |
20 |
tgatatgcatgcatggtgaagaatgtccacattgcttcacttacgtgtccatcgtttaaccttctctacatttctataaataaa-tcactacataacaat |
118 |
Q |
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| T |
38932848 |
tgatatgcatgcatggtgaagaatgtccacattgcttcacttacgtgtccatcgtttaaccttctctacatttctataaataaaataactacataacaat |
38932749 |
T |
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| Q |
119 |
ctccacagtt---cagctatcatggcaaagacaaaatctcttctgatcacactttgtttgttactcttcttatgttcagcacgacagcttccaccacgtc |
215 |
Q |
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| T |
38932748 |
ctccacagttgttcagctagcatggcaaagacaaaatctcttctgatcacactttgtttgttactcttcttctgttcagcacgacagcttccaccacgtc |
38932649 |
T |
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| Q |
216 |
atcaaattgagtcgtgccaactagatagcatcgatgcattggaacctgacaaccgcattgagtcagaagcaggtctgactgaaacatgggatgctaatca |
315 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38932648 |
atcaaagtgagtcgtgccaactagatagcatcgatgcattggaacctgacaacagcattgagtcagaagcaggtctgactgaaacatgggatgctaatca |
38932549 |
T |
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| Q |
316 |
ccctgagctacgttgtgttggtgtctctg |
344 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
38932548 |
ccctgagctacgttgtgttggtgtctctg |
38932520 |
T |
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