View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9763_low_10 (Length: 346)
Name: NF9763_low_10
Description: NF9763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9763_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 7 - 321
Target Start/End: Original strand, 6916615 - 6916929
Alignment:
| Q |
7 |
gatatggcctttcaagtacacggtcctaaatttattgggggtagttatctagaaaaaagaattgtagttttggttcannnnnnngggtcaacaaaatttt |
106 |
Q |
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| T |
6916615 |
gatatggcctttcaagtacacggtcctaaattttttgggggtagttatctggaaaaaagaattgtggttttggttcatttttttgggtcaacaaaatttt |
6916714 |
T |
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| Q |
107 |
gaaagcaaataaaaagtagctataattgtgatagtgtacaatttggtgtcactccaatgtttttattgggaaacttgatttaatattaaatttatcatat |
206 |
Q |
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| T |
6916715 |
gaaagcaaataaaaagtagctataattgtgatagtgtacaatttggtgtcactccaatgtttttattgggaaacttgatttaacattaaatttatcatat |
6916814 |
T |
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| Q |
207 |
atttgcgttttcttatattttagttgacacatacatgctcattttcaattctatcatacattgttcagctagtttagatttttgttcacttatcaatgca |
306 |
Q |
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| T |
6916815 |
atttgcgttttcttatattttagttgacacatacatgctcattttcaattctatcatacattgttcagctagtttagatttttgttcacttatcaatgca |
6916914 |
T |
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| Q |
307 |
cttccgactgtaaat |
321 |
Q |
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|||| |||||||||| |
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| T |
6916915 |
cttctgactgtaaat |
6916929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 319
Target Start/End: Original strand, 6890644 - 6890693
Alignment:
| Q |
270 |
ttcagctagtttagatttttgttcacttatcaatgcacttccgactgtaa |
319 |
Q |
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| T |
6890644 |
ttcagctagtttagattttggttcacttgtcaatgtacttctgactgtaa |
6890693 |
T |
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