View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9763_low_13 (Length: 309)

Name: NF9763_low_13
Description: NF9763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9763_low_13
NF9763_low_13
[»] chr8 (1 HSPs)
chr8 (9-309)||(35073885-35074164)


Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 309
Target Start/End: Complemental strand, 35074164 - 35073885
Alignment:
Q  9 agcataggtgaacaacatttaccacattttacactttgaattttatagctggttgattcaatacaataccattcaaaattcaggaatttcaacaaaaaat 108  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35074164 agcaaaggtgaacaacatttaccacattttacactgtgaattttatagctggttgattcaatacaataccattcaaaattcaggaatttcaacaaaaaat 35074065  T
Q  109 aaatcaatgcaccaagccacagcagaacaaattgggaagacaaattatgcaacaaaaattagtggtgccggagtaactaccacctaaatcctgaggagtg 208  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 
T  35074064 aagtcaatgcaccaagccacagcagaacaaattgggaagacaaattatgcaacaaaaattagtggtgccggagtaactaccacctaa------------- 35073978  T
Q  209 ttgcccaccaagtgggatttttagcggctttagggagaaccgaagccgcatctatggggatatgggagattaattttggaccgtcgttgaccagctaggt 308  Q
             ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35073977 --------taagtgggatttttagtggctttagggagaaccgaagccgcatctatggggatatgggagattaattttggaccgtcgttgaccagctaggt 35073886  T

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