View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9763_low_15 (Length: 277)
Name: NF9763_low_15
Description: NF9763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9763_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 263
Target Start/End: Original strand, 2047546 - 2047801
Alignment:
| Q |
13 |
acatcaacaaccttgaaatgtttattatcaaaagtttggtttttgttgatatgtttgaattgtgcaggagttttgggttggaaatgaagaacttgttaat |
112 |
Q |
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| T |
2047546 |
acatcaaaaaccttgaaatgtttattatcaaaagtttggtttttcttgatatgtttgaattgtgcaggagttttgggttggaaatgaagaacttgttaat |
2047645 |
T |
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| Q |
113 |
atttatgagaagagatttggtgatgctggttatattcattttatgcttggaaggactaagaaccgtagtgatggtatgttacagc------cgtactccc |
206 |
Q |
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| T |
2047646 |
atttatgagaagagatttggtgatgctggttatattcattttatgcttggaaggactaagaaccgtagtgatggtatgttacaacttacaacgtaccccc |
2047745 |
T |
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| Q |
207 |
tcatttgnnnnnnntacacttttcaattctcagttttgtccatgtttttgtaattat |
263 |
Q |
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| T |
2047746 |
tca-ttgaaaaaaatacacttttcaattctcagttttgtccatgtttttgtaattat |
2047801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 75 - 191
Target Start/End: Original strand, 29158442 - 29158558
Alignment:
| Q |
75 |
tgcaggagttttgggttggaaatgaagaacttgttaatatttatgagaagagatttggtgatgctggttatattcattttatgcttggaaggactaagaa |
174 |
Q |
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| T |
29158442 |
tgcaggaattttgggttggaaatgaagaacttgttaatatgtatgagaagagacttggtgatgctggttatattcattttaagcttggaaggactaataa |
29158541 |
T |
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| Q |
175 |
ccgtagtgatggtatgt |
191 |
Q |
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| T |
29158542 |
ccgtggtgatggtatgt |
29158558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 190
Target Start/End: Complemental strand, 42559781 - 42559669
Alignment:
| Q |
78 |
aggagttttgggttggaaatgaagaacttgttaatatttatgagaagagatttggtgatgctggttatattcattttatgcttggaaggactaagaaccg |
177 |
Q |
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| T |
42559781 |
aggagttttgggtaggaaacgaagagcttgttaatttgtatgaaaagagacttggagatgccggttatgtcagtttcaaacttggaaggactaacaaccg |
42559682 |
T |
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| Q |
178 |
tagtgatggtatg |
190 |
Q |
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| T |
42559681 |
tggagatggtatg |
42559669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 8683805 - 8683872
Alignment:
| Q |
78 |
aggagttttgggttggaaatgaagaacttgttaatatttatgagaagagatttggtgatgctggttat |
145 |
Q |
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| T |
8683805 |
aggaattttgggttggaaatgaagaacttgttcaaatgtttgaggagagacttggggatgctggttat |
8683872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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